astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
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Jun 25, 2025 - Python
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imaging-mass-cytometry
Here are 8 public repositories matching this topic...
Spatial omics in the browser for hundreds of images at once across many assays and formats | https://rakaia.io/
browser viewer spatial spatial-analysis spatial-data omics spatial-proteomics histology spatial-transcriptomics zarr visium multiplexed-imaging imaging-mass-cytometry spatial-omics xenium spatial-biology
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Apr 21, 2026 - Python
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis
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Sep 23, 2025 - R
R package for visualization of highly multiplexed imaging data
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May 27, 2025 - R
Spatial analysis toolkit for single cell multiplexed tissue data
tissue network spatial-analysis hotspot single-cell heterogeneity spatial-distribution cell-cell-interaction spaital-analysis imaging-mass-cytometry multiplexed-ion-beam-imaging spatial-omics
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Sep 2, 2024 - Python
Visualisation software for imaging mass cytometry data
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Feb 22, 2023 - Rust
Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.
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Feb 21, 2023 - Rust
Toolkit for computational analysis of whole-slide imaging mass cytometry (WS-IMC) data
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Oct 12, 2025 - Jupyter Notebook
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