Allow window overlap when calculating Tajima's D#228
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ymat2 wants to merge 2 commits intovcftools:masterfrom
Open
Allow window overlap when calculating Tajima's D#228ymat2 wants to merge 2 commits intovcftools:masterfrom
ymat2 wants to merge 2 commits intovcftools:masterfrom
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This PR suggests modifying the option --TajimaD to calculate with sliding windows like Fst and nucleotide diversity. #92
Created
output_windowed_Tajima_Dfunction that enables overlapping windows with--TajimaD-sizeand--TajimaD-stepoptions.The algorithm to calculate Tajima's D is based on the existing
output_Tajima_Dfunction.For comparison and testing, the original
output_Tajima_Dfunction remains.