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@veg

iGEM/UCSD evolutionary biology and bioinformatics group

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  1. hyphy hyphy Public

    HyPhy: Hypothesis testing using Phylogenies

    HyPhy 251 70

  2. hivtrace hivtrace Public

    JavaScript 22 14

  3. phylotree.js phylotree.js Public

    Interactive viewer of phylogenetic trees

    JavaScript 197 78

Repositories

Showing 10 of 104 repositories
  • datamonkey-js Public

    Datamonkey - Run state-of-the-art statistical models through the comfort of your browser

    veg/datamonkey-js’s past year of commit activity
    JavaScript 10 9 0 9 Updated Mar 27, 2026
  • phylotree.js Public

    Interactive viewer of phylogenetic trees

    veg/phylotree.js’s past year of commit activity
    JavaScript 197 MIT 78 0 5 Updated Mar 26, 2026
  • hyphy Public

    HyPhy: Hypothesis testing using Phylogenies

    veg/hyphy’s past year of commit activity
    HyPhy 251 70 6 1 Updated Mar 23, 2026
  • datamonkey-js-server Public
    veg/datamonkey-js-server’s past year of commit activity
    JavaScript 3 7 1 4 Updated Mar 22, 2026
  • hivtrace-viz Public
    veg/hivtrace-viz’s past year of commit activity
    JavaScript 10 10 0 4 Updated Mar 20, 2026
  • hivclustering Public

    Infer molecular transmission networks from pairwise distance files (part of HIV-TRACE)

    veg/hivclustering’s past year of commit activity
    Python 5 4 9 1 Updated Mar 12, 2026
  • hivtrace Public
    veg/hivtrace’s past year of commit activity
    JavaScript 22 MIT 14 5 0 Updated Mar 12, 2026
  • b-still Public

    B-STILL method data/scripts/reproducibility

    veg/b-still’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 9, 2026
  • prime Public

    Data and scripts for the PRIME paper

    veg/prime’s past year of commit activity
    1 0 0 0 Updated Mar 9, 2026
  • datamonkey-docs Public

    Documentation for Datamonkey/HyPhy

    veg/datamonkey-docs’s past year of commit activity
    TypeScript 0 1 0 0 Updated Feb 25, 2026
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