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Commits on Mar 5, 2021

• v2.1.5 fix: adjust coverage estimation for long reads

  gpertea

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  f33b7c3

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Commits on Aug 25, 2020

• shorten sleep duration while waiting for threads

  gpertea

  committed
  bd2cd4b

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• builds with mingw64/msys

  gpertea

  committed
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Commits on Aug 23, 2020

• builds and passes tests with new GHashMap.hh

  gpertea

  committed
  f0d78fe

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Commits on Jul 6, 2020

• fixed infinte loop for eonly case, and updated to 2.1.4

  

  Mihaela Pertea

  committed
  97b110b

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Commits on May 30, 2020

• minor GVec adjustments

  gpertea

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  b44ee90

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Commits on May 16, 2020

• patch version

  gpertea

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  490ef38

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Commits on May 13, 2020

• Merge branch 'master' of github.com:gpertea/stringtie

  

  Mihaela Pertea

  committed
  16ec4cb

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• fixed option -E

  

  Mihaela Pertea

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  b0bfa81

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Commits on May 12, 2020

• fixed --viral description typo

  gpertea

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  ea53e25

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• fixed --viral description typo

  gpertea

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  68f7675

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• minor usage message reformatting

  gpertea

  committed
  8f43fad

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• fixed eonly for longreads; viral option; several other bug fixes

  

  Mihaela Pertea

  committed
  dca40e4

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Commits on Apr 27, 2020

• fix ref order bug for multiple BAM input files

  gpertea

  committed
  c352594

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Commits on Apr 26, 2020

• added brec->uval as file index when multiple BAMs are given

  gpertea

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Commits on Apr 17, 2020

• Version fix from 2.1.3 to 2.1.2

  

  Mihaela Pertea

  committed
  1327f46

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• Merge branch 'master' of github.com:gpertea/stringtie

  

  Mihaela Pertea

  committed
  82309ba

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• Final version of StringTie 2.1.3 including loading point-features and more accurate long read assembly

  

  Mihaela Pertea

  committed
  13a333d

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Commits on Apr 16, 2020

• GHash cleanup

  gpertea

  committed
  d6d9cf4

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Commits on Feb 28, 2020

• added --ptf to the usage message

  gpertea

  committed
  6881490

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• change version to v2.1.2

  gpertea

  committed
  8e994e6

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• --ptf loading works as expected, no memory leaks

  gpertea

  committed
  f4f9f0d

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• fixed memory issues for new refpts data

  gpertea

  committed
  f5f52e5

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• bundle->ptfs() populated, needs testing

  gpertea

  committed
  bd59b5c

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Commits on Feb 27, 2020

• need to add point-features to the bundle

  gpertea

  committed
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• need to add point-features to the bundle

  gpertea

  committed
  1669695

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Commits on Jan 29, 2020

• fixed small bug in trimming procedure

  mpertea

  committed
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Commits on Jan 26, 2020

• New bug fixes in version2.1.0; Verifies consensus splice sites if genomic sequence is provided; Added option -R to output unassembled, cleaned, and collapsed redundant long reads

  

  Mihaela Pertea

  committed
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Commits on Jan 21, 2020

• v2.1.0 : improved start/end trimming for long reads; fixed issue #259

  gpertea

  committed
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Commits on Dec 13, 2019

• possible fix for the multi-threading problem?

  gpertea

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Commits on Dec 12, 2019

• clearing the bundle should be fully thread protected?

  gpertea

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Commits on Nov 30, 2019

• version bump to 2.0.5

  gpertea

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Commits on Nov 5, 2019

• added -S as alternative to --rseq

  gpertea

  committed
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Commits on Nov 4, 2019

• added --rseq/--refseq to load genome sequence data for each bundle

  gpertea

  committed
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Commits on Oct 29, 2019

• fixed -e bug for unstranded alignments; fixed TPM -nan

  gpertea

  committed
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