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@MoseleyBioinformaticsLab

Moseley Bioinformatics and Systems Biology Lab

We develop and maintain a set of high-quality, well-documented, open source code repositories for general scientific re-use.

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  1. GOcats GOcats Public

    A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts

    Python 7 2

  2. mwtab mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Reson…

    Python 12 2

  3. academic_tracker academic_tracker Public

    Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.

    Python 22 6

  4. ICIKendallTau ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    R 6 1

  5. kegg_pull kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    Python 11 2

  6. mwFileStatusWebsite mwFileStatusWebsite Public

    Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.

    HTML 4

Repositories

Showing 10 of 48 repositories
  • LabSystemStatus Public

    Contains files describing the current status of lab computers and services.

    MoseleyBioinformaticsLab/LabSystemStatus’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 25, 2026
  • recount3 Public

    Python package providing API and CLI access to recount3

    MoseleyBioinformaticsLab/recount3’s past year of commit activity
    Python 1 0 0 0 Updated Mar 25, 2026
  • MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    MoseleyBioinformaticsLab/MESSES’s past year of commit activity
    Python 0 0 5 0 Updated Mar 25, 2026
  • mwFileStatusWebsite Public

    Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.

    MoseleyBioinformaticsLab/mwFileStatusWebsite’s past year of commit activity
    HTML 4 BSD-3-Clause-Clear 0 0 0 Updated Mar 22, 2026
  • manuscript.ICIKendallTauMetabolomics Public

    ICI-Kt methodology using metabolomics data

    MoseleyBioinformaticsLab/manuscript.ICIKendallTauMetabolomics’s past year of commit activity
    R 0 0 2 0 Updated Mar 20, 2026
  • kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    MoseleyBioinformaticsLab/kegg_pull’s past year of commit activity
    Python 11 2 4 0 Updated Mar 20, 2026
  • monorail-external Public Forked from langmead-lab/monorail-external

    examples to run monorail externally

    MoseleyBioinformaticsLab/monorail-external’s past year of commit activity
    Shell 0 MIT 8 0 0 Updated Feb 27, 2026
  • categoryCompare2 Public

    Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

    MoseleyBioinformaticsLab/categoryCompare2’s past year of commit activity
    R 1 1 21 0 Updated Feb 20, 2026
  • ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    MoseleyBioinformaticsLab/ICIKendallTau’s past year of commit activity
    R 6 1 7 0 Updated Feb 17, 2026
  • helsley.liverCarcinomaMultiomics Public

    Code and Data for An Integrated Multi-omic Analysis Reveals Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma

    MoseleyBioinformaticsLab/helsley.liverCarcinomaMultiomics’s past year of commit activity
    R 1 CC-BY-4.0 0 0 0 Updated Feb 17, 2026
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