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limma standR SpatialExperiment

14 days ago • updated 11 days ago Krista • 0

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standR SpatialExperiment

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stand standR

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SummarizedExperiment StandR

updated 3.2 years ago by helucro ▴ 70 • written 3.2 years ago by MxT • 0

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Comment: PTM analysis in LIMPA by Gordon Smyth 53k

Can you please upgrade to R 4.6.0 and the devel version of limpa, or else just wait for Bioc 3.23 to be released in a few days? The readDIA…

Comment: Empty p-value column in GENESIS output by Stephanie M. Gogarten ▴ 890

The warning message comes from here: https://github.com/UW-GAC/GENESIS/blob/devel/R/admixMap.R#L97 Do you see the message only once, or mu…

Answer: PTM analysis in LIMPA by Diego FGR • 0

Dear Gordon I have two follow up questions: 1. In this case, the complete report.parquet need to be used? or the site_report.parquet? …

Answer: limma for lumi- request help design/contrast matrix by Palomaresson • 0

In your Illumina BeadChips HumanWG6 analysis of 42 samples using a factorial time course design across multiple media, [Cadeau Magique][1] …

Comment: snp.plotter - GWAS results and linkage disequilibrium matrix as input by Ccollisterson • 0

For snp.plotter, the typical workflow expects a genotype file because it uses that data to calculate or validate linkage disequilibrium (LD…

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Proteomics analysis using LIMMA

A: WGCNA grey module

WGCNA grey module

WGCNA: overlapping colors in plotDendroAndColors?

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Popular Question to Stephanie M. Gogarten ▴ 890