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Split out amino acid alignment generation

WASAP

Status: Open.

#452 In cbg-ethz/sr2silo;

· Taepper opened on Mar 24, 2026

Sequences stuck in review

Status: Open.

#448 In cbg-ethz/sr2silo;

· Taepper opened on Mar 9, 2026

Document the submission flow to Loculus, as it's implemented here.

Status: Open.

#442 In cbg-ethz/sr2silo;

· fhennig opened on Feb 17, 2026

Document that submitting to Loculus is possible in the README

Status: Open.

#441 In cbg-ethz/sr2silo;

· fhennig opened on Feb 17, 2026

Migrate from Bioconda to container-based distribution for faster release cycles

enhancementNew feature or requestNew feature or request

infrastructureCI/CD, build, deploymentCI/CD, build, deployment

Status: Open.

#408 In cbg-ethz/sr2silo;

· gordonkoehn opened on Dec 15, 2025

Auto-update SILO database config from LAPIS API

enhancementNew feature or requestNew feature or request

Status: Open.

#379 In cbg-ethz/sr2silo;

· gordonkoehn opened on Oct 27, 2025