Repositories list

• Tools

  Public
  Helper tools for working with AIDA software

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• website

  Public
  Aswendt Lab Website

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• 2026_Klein_Behaviour

  Public
  Recovery after Stroke in Humans

  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• AIDAmri

  Public
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain

  Python

  •

  GNU General Public License v3.0

  •1313 forks•3636 stars•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• AIDAqc

  Public
  An automated and simple tool for fast quality analysis of animal MRI

  quality-controlmripreclinical-imaging+ 7

  quality-controlmripreclinical-imagingoutlier-detectionghostingmutual-informationrelativemovement-detectionsnrtsnr

  Python

  •

  GNU General Public License v3.0

  •77 forks•88 stars•88 issues•00 pull requests•Updated Jan 17, 2026Jan 17, 2026

• AIDAconnect

  Public
  Mouse brain network analysis of rs-fMRI and DTI data using graph theory

  MATLAB

  •

  GNU General Public License v3.0

  •66 forks•1010 stars•11 issue•00 pull requests•Updated Jan 16, 2026Jan 16, 2026

• AIDAhisto

  Public
  Atlas-based imaging data analysis tool for quantitative mouse brain histology (AIDAhisto)

  MATLAB

  •22 forks•44 stars•00 issues•00 pull requests•Updated Jan 16, 2026Jan 16, 2026

• MRI_Standardization_AIDAqc

  Public
  Small animal MRI Standardization initiative using AIDAqc

  GNU General Public License v3.0

  •11 fork•33 stars•00 issues•00 pull requests•Updated Dec 27, 2025Dec 27, 2025

• orthanc-icf-ui

  Public
  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 1, 2025Sep 1, 2025

• Project_Diffusion_MCAO_PT

  Public
  Repository with code to replicate the analysis of structural connectivity in MCAO and PT stroke mouse diffusion MRI data.

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2024Nov 6, 2024

• inm-icf-utilities

  Public
  Python

  •

  MIT License

  •55 forks•00 stars•00 issues•00 pull requests•Updated Sep 12, 2024Sep 12, 2024

• AIDAqc_Figures

  Public
  These codes were used to create the plots for the following publication: tbd

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 28, 2024Aug 28, 2024

• AIDAmri-docs

  Public
  Documentary of Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2024Jun 1, 2024

• 2023_Kuhnhaeuser_PSS_code

  Public
  Code relevant for this publication

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2023Nov 6, 2023

• Project_Microbiome

  Public
  Project repository rs-fMRI of germfree and naïve mice with/without cortical stroke

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 22, 2021Jun 22, 2021

• Project-C3a_peri-infarct

  Public
  Project repository C3a peri-infarct study

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 10, 2021Mar 10, 2021

• AIDAdb

  Public
  Online research database to acquire and manage preclinical experiments

  11 fork•00 stars•00 issues•00 pull requests•Updated Mar 30, 2020Mar 30, 2020