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@Eggeling-Lab-Microscope-Software Eggeling Lab

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    19 repositories

    • BrightEyes-MCS

      Public
      BrightEyes Microscope Control Suite
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • blob-B-gone

      Public
      A lightweight tool to remove blob artifacts from 2D/3D point cloud data as produced by MINFLUX
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • pycro-manager

      Public
      Python control of micro-manager for customized data acquisition
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •54•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • ImSwitch

      Public
      ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modal…
      Python
      •
      GNU General Public License v3.0
      •39•0•0•0•Updated Mar 1, 2024Mar 1, 2024

    • PyVCAM

      Public
      Python3.X wrapper for Photometrics and QImaging PVCAM based cameras
      Python
      •
      MIT License
      •20•0•0•0•Updated Nov 23, 2023Nov 23, 2023

    • utterly_useful_utilities

      Public
      A small collection of general utility functions I hack together and use. Feel free to reach out to me, should you have a request.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 7, 2023Nov 7, 2023

    • micro-manager

      Public
      Microscope control and image acquisition integrated with ImageJ.
      Java
      •248•0•0•0•Updated Oct 13, 2023Oct 13, 2023

    • ImSwitch-UC2

      Public
      ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modal…
      Python
      •
      GNU General Public License v3.0
      •18•0•0•0•Updated Oct 13, 2023Oct 13, 2023

    • AcqEngJ

      Public
      Java-based acquisition engine for Micro-manager
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •7•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • NDViewer

      Public
      N-D multichannel multiresolution image viewer for Micro-Manager
      Java
      •6•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • NDTiffStorage

      Public
      N-dimensional, multiresolution file format for Micro-Manager
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •14•0•0•0•Updated Sep 28, 2023Sep 28, 2023

    • TRAIT2D

      Public
      TRAIT2D is a cross-platform Python software package with compilable graphical user interfaces (GUIs) to support Single Particle Tracking experiments.
      Python
      •
      GNU General Public License v3.0
      •10•10•4•2•Updated Jul 6, 2023Jul 6, 2023

    • DeepTrack-2.0

      Public
      DeepTrack-2.0
      Python
      •
      MIT License
      •61•0•0•0•Updated Jul 27, 2022Jul 27, 2022

    • microscope

      Public
      Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.
      Python
      •
      GNU General Public License v3.0
      •43•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • pims

      Public
      Python Image Sequence: Load video and sequential images in many formats with a simple, consistent interface.
      Python
      •
      Other
      •70•0•0•0•Updated May 28, 2022May 28, 2022

    • PiSCAT

      Public
      PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •14•0•0•0•Updated Apr 11, 2022Apr 11, 2022

    • trackpy

      Public
      Python particle tracking toolkit
      Python
      •
      Other
      •144•0•0•0•Updated Feb 18, 2022Feb 18, 2022

    • LaserDiodeDriver

      Public
      C++
      •
      MIT License
      •1•0•0•0•Updated Dec 7, 2021Dec 7, 2021

    • rvt

      Public
      Radial Variance Transform (RVT) python package
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Apr 7, 2021Apr 7, 2021
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