Skip to content

@StructuralNeurobiologyLab Kornfeld laboratory

Change the repository type filter

All

    Repositories list

    15 repositories

    • MOSS

      Public
      Microscopy Oriented Segmentation with Supervision
      Python
      •0•2•0•0•Updated Apr 8, 2026Apr 8, 2026

    • nisb

      Public
      HTML
      •0•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • areaX-connectomic-analysis

      Public
      Code to analyse connectomic datasets that are processed with SyConn
      Python
      •
      GNU General Public License v2.0
      •0•1•1•0•Updated Nov 18, 2025Nov 18, 2025

    • banis

      Public
      BANIS: Baseline for Affinity-based Neuron Instance Segmentation
      Python
      •
      MIT License
      •4•7•0•1•Updated Sep 10, 2025Sep 10, 2025

    • SyConn

      Public
      Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
      image-processingimage-analysisconnectomics
      image-processingimage-analysisconnectomicssemantic-segmentationconnectivity-matrixmorphology-analysis
      Python
      •
      GNU General Public License v2.0
      •8•44•3•2•Updated Jul 28, 2025Jul 28, 2025

    • beach_collection

      Public
      Python
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • DeepFocus

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 17, 2025Feb 17, 2025

    • autodoc

      Public
      This is a repository for automatic generation of docstrings
      Python
      •
      MIT License
      •1•9•3•0•Updated Jan 29, 2024Jan 29, 2024

    • SyConn2Scripts

      Public
      Python
      •0•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • SyConn-Neuroglancer

      Public
      Adaptation of the WebGL-based volumetric viewer https://github.com/google/neuroglancer. Provides an analysis interface for filtering neurons based on properties…
      webgltypescriptpython3
      webgltypescriptpython3
      TypeScript
      •
      Apache License 2.0
      •0•1•1•0•Updated May 4, 2023May 4, 2023

    • emcaps

      Public
      Code for the paper "Genetically encoded barcodes for correlative volume electron microscopy"
      Python
      •
      MIT License
      •1•1•1•0•Updated May 1, 2023May 1, 2023

    • MorphX

      Public
      Toolkit for exploration and segmentation of 3D morphologies.
      Python
      •
      GNU General Public License v2.0
      •1•3•0•0•Updated May 28, 2022May 28, 2022

    • kimimaro

      Public
      Skeletonize densely labeled 3D image segmentations.
      Python
      •
      GNU General Public License v3.0
      •30•1•0•0•Updated Nov 8, 2021Nov 8, 2021

    • LightConvPoint

      Public
      Python
      •
      Other
      •15•1•0•0•Updated Nov 5, 2021Nov 5, 2021

    • NeuronX

      Public
      Application of Morphx to neurons
      Python
      •1•0•0•0•Updated Mar 28, 2021Mar 28, 2021
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.