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@aphp Greater Paris University Hospitals (AP-HP)

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    51 repositories

    • Cohort360-Back-end

      Public
      Part of the Cohort360 Project @ https://github.com/aphp/Cohort360, backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Adminis…
      apiadministrationportal
      apiadministrationportalcohort
      Python
      •
      Apache License 2.0
      •1•7•0•10•Updated Apr 17, 2026Apr 17, 2026

    • ig-template-aphp-v2

      Public
      CSS
      •1•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • edsnlp

      Public
      Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
      nlpfasttext-mining
      nlpfasttext-miningdeep-learningpytorchspacymedicalfrenchmulti-taskrule-based
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •41•162•26•11•Updated Apr 17, 2026Apr 17, 2026

    • Cohort360-FrontEnd

      Public
      A web application to find patients, build cohorts and visualize health records
      querydata-visualizationmedical
      querydata-visualizationmedicalfhirvisualize-datamedtechclinical-datacohortsomopcohort-analysis
      TypeScript
      •
      Apache License 2.0
      •9•55•3•19•Updated Apr 16, 2026Apr 16, 2026

    • jupyter-eds-notebooks

      Public
      jupyter-eds-notebooks provides Docker images with preconfigured Jupyter environments for clinical and health data analysis, tailored for AP‑HP Datalabs and the …
      data-sciencelabdata-visualization
      data-sciencelabdata-visualizationhealthcaredata-analysis
      Shell
      •
      Apache License 2.0
      •1•1•4•1•Updated Apr 16, 2026Apr 16, 2026

    • Cohort360-AdministrationPortal

      Public
      TypeScript
      •0•0•0•3•Updated Apr 15, 2026Apr 15, 2026

    • HELIX

      Public
      HELIX (Health and Exploration Lab for Innovative eXperiments) is an AP‑HP open‑source platform that bundles data lab and clinical research tools into a secure, …
      data-sciencehelmlab
      data-sciencehelmlabdata-visualizationdata-analysis
      Python
      •
      Apache License 2.0
      •0•3•1•0•Updated Apr 14, 2026Apr 14, 2026

    • fhir-mapbuilder

      Public
      FHIR MapBuilder is a Visual Studio Code extension designed to facilitate the edition of FHIR StructureMap resources using FHIR Mapping Language (FML).
      fhirfml
      fhirfml
      TypeScript
      •
      Other
      •2•5•2•0•Updated Apr 11, 2026Apr 11, 2026

    • IG-fhir-dm

      Public
      FHIR Implementation Guide for Data Management
      data-managementhl7-fhir
      data-managementhl7-fhir
      Python
      •
      Other
      •2•7•1•0•Updated Apr 11, 2026Apr 11, 2026

    • Cohort360-QueryExecutor

      Public
      Scala
      •
      Mozilla Public License 2.0
      •0•2•0•5•Updated Apr 10, 2026Apr 10, 2026

    • ig-template-aphp

      Public
      Custom FHIR IG Publisher template for AP-HP (aphp.fhir.template). Extends hl7.fhir.template with AP-HP branding, Jekyll/Liquid overrides, and CSS/JS customizati…
      HTML
      •1•0•1•0•Updated Apr 9, 2026Apr 9, 2026

    • redcap-containers

      Public
      A set of container images used to run APHP REDCap Helmchart
      cloudcontainerhealth
      cloudcontainerhealthredcapecrf
      Dockerfile
      •
      Apache License 2.0
      •3•1•0•0•Updated Apr 1, 2026Apr 1, 2026

    • redcap-helmchart

      Public
      APHP REDCap cloud-native and vendor-agnostic HelmChart
      cloudhealthredcap
      cloudhealthredcaphelmchartecrfaphp
      Go Template
      •
      Apache License 2.0
      •6•6•1•1•Updated Apr 1, 2026Apr 1, 2026

    • ci-workflows

      Public
      This repository hosts GitHub Workflows examples to be used in APHP Projects
      Apache License 2.0
      •2•0•1•0•Updated Apr 1, 2026Apr 1, 2026

    • fig-atelier-1

      Public
      Dépôts de l'atelier FHIR #1
      GLSL
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • foldedtensor

      Public
      PyTorch extension for handling deeply nested sequences of variable length
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•15•1•2•Updated Mar 19, 2026Mar 19, 2026

    • mkdocs-eds

      Public
      Various plugins and extensions to customize mkdocs
      CSS
      •
      Apache License 2.0
      •0•2•2•0•Updated Mar 1, 2026Mar 1, 2026

    • eds-pseudo

      Public
      EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports
      nlppseudonymisationedsnlp
      nlppseudonymisationedsnlp
      Python
      •
      Other
      •9•71•3•0•Updated Feb 5, 2026Feb 5, 2026

    • hl7.fhir.fr.core

      Public
      FHIR FrCore Implementation Guide
      GLSL
      •
      Other
      •6•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • Entretiens-Cohort360

      Public
      Shell
      •16•0•0•6•Updated Jan 23, 2026Jan 23, 2026

    • confit

      Public
      Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, mi…
      pythoncliregistry
      pythoncliregistryvalidationinterpolationconfiguration
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•11•2•1•Updated Jan 21, 2026Jan 21, 2026

    • nf-s97

      Public
      normes homologuées par AFNOR : NF S97-53x Novembre 2010 Informatique de santé - Messages concernant la transfusion sanguine - Message de traçabilité de produits…
      Java
      •0•0•0•0•Updated Dec 10, 2025Dec 10, 2025

    • kerberos-kinit

      Public
      This is a simple docker image continuously refreshing a krb5 ticket cache. It is intended to be used in K8S as a side-car runing in a pod needing such authentic…
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • formbuilder

      Public
      The AP-HP FormBuilder allows building (creating and editing) forms in FHIR - R4 format (Questionnaire). It is based on the NLM FormBuilder, an open-source proje…
      fhir
      fhir
      TypeScript
      •
      Other
      •0•1•0•0•Updated Oct 24, 2025Oct 24, 2025

    • demo-fhir-dm

      Public
      Roff
      •0•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • prism-lang-fsh

      Public
      A Prism.js language definition plugin for FHIR Shorthand
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • prism-lang-fml

      Public
      A Prism.js language definition plugin for FHIR Mapping Language (FML)
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • IG-fhir-formbuilder

      Public
      The FHIR Implementation Guide of the FormBuilder is available:
      fhir-questionnairefhir-implementation-guide
      fhir-questionnairefhir-implementation-guide
      GLSL
      •
      Other
      •0•3•0•0•Updated Sep 16, 2025Sep 16, 2025

    • spark-solr

      Public
      Tools for reading data from Solr as a Spark RDD and indexing objects from Spark into Solr using SolrJ.
      Scala
      •
      Apache License 2.0
      •251•0•0•1•Updated Jul 29, 2025Jul 29, 2025

    • Cohort360

      Public
      HTML
      •0•3•0•0•Updated Jul 24, 2025Jul 24, 2025
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