Skip to content
Change the repository type filter

All

    Repositories list

    • Collection of public notebooks for all projects on BossDB
      Jupyter Notebook
      Apache License 2.0
      0120Updated Apr 19, 2026Apr 19, 2026
    • Summaries of access stats (full downloads & streaming) for each EMBER-Dandiset on the EMBER archive.
      0010Updated Apr 18, 2026Apr 18, 2026
    • EMBER Documentation
      0041Updated Apr 17, 2026Apr 17, 2026
    • ffn

      Public
      Flood-Filling Networks for instance segmentation in 3d volumes.
      Python
      Apache License 2.0
      103000Updated Apr 17, 2026Apr 17, 2026
    • BBQS EMBER Archive web app
      Vue
      21124Updated Apr 16, 2026Apr 16, 2026
    • colocar

      Public
      tools for sparse human annotation of three-dimensional [neuroscience] datasets
      JavaScript
      04263Updated Apr 15, 2026Apr 15, 2026
    • MICrONS Proofreading App
      JavaScript
      Apache License 2.0
      21141Updated Apr 10, 2026Apr 10, 2026
    • Containerized version of SLEAP
      Shell
      0070Updated Apr 10, 2026Apr 10, 2026
    • npyjs

      Public
      Read numpy .npy files in JavaScript
      TypeScript
      Apache License 2.0
      249760Updated Apr 7, 2026Apr 7, 2026
    • Simple example to test setting environment variables through a Pennsieve application
      Dockerfile
      0000Updated Apr 6, 2026Apr 6, 2026
    • Core repository for the EMBER ARCHIVE
      Mermaid
      2011Updated Mar 31, 2026Mar 31, 2026
    • EMBER - DANDI API server and Web app
      Python
      Apache License 2.0
      20260Updated Mar 26, 2026Mar 26, 2026
    • A repository to collect docs/issues on DANDI project infrastructure for Ember
      HCL
      Apache License 2.0
      9070Updated Mar 24, 2026Mar 24, 2026
    • grand

      Public
      Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.
      Python
      Apache License 2.0
      811460Updated Mar 20, 2026Mar 20, 2026
    • "Hello world" example of Github repository to integrate as a Pennsieve application
      Python
      0000Updated Mar 20, 2026Mar 20, 2026
    • A Language Interface to the BossDB Ecosystem
      Python
      Apache License 2.0
      0163Updated Mar 12, 2026Mar 12, 2026
    • Web-based dense annotation tool for connectomics
      Svelte
      Apache License 2.0
      0380Updated Mar 3, 2026Mar 3, 2026
    • Resources and documentation to create and manage proofreading tasks on NeuVue
      Jupyter Notebook
      Apache License 2.0
      1200Updated Feb 23, 2026Feb 23, 2026
    • igneous

      Public
      Python pipeline for Neuroglancer compatible Downsampling, Meshing, Remapping, and more. Originally by Nacho and Will.
      Python
      GNU General Public License v3.0
      24000Updated Feb 23, 2026Feb 23, 2026
    • Scratch repository for v1dd transfer
      Shell
      0000Updated Feb 20, 2026Feb 20, 2026
    • Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
      Python
      BSD 3-Clause "New" or "Revised" License
      9000Updated Feb 19, 2026Feb 19, 2026
    • A registry of publicly available datasets on AWS
      Python
      Apache License 2.0
      1.1k000Updated Jan 20, 2026Jan 20, 2026
    • Python
      Apache License 2.0
      0000Updated Jan 19, 2026Jan 19, 2026
    • The BossDB Cookbook is a collection of introductory notebooks and examples for interfacing with the BossDB system.
      Jupyter Notebook
      0611Updated Jan 16, 2026Jan 16, 2026
    • BBQS EMBER Cookbook
      0000Updated Jan 16, 2026Jan 16, 2026
    • dotmotif

      Public
      A performant, powerful query framework to search for network motifs
      Python
      Apache License 2.0
      109120Updated Jan 8, 2026Jan 8, 2026
    • Metadata specification and upload instructions for BossDB images, experiments, and annotations
      1252Updated Dec 29, 2025Dec 29, 2025
    • TypeScript
      Apache License 2.0
      0161Updated Dec 24, 2025Dec 24, 2025
    • Rust
      Apache License 2.0
      0010Updated Dec 9, 2025Dec 9, 2025
    • Implementation of the Cypher language for searching NetworkX graphs
      Python
      Apache License 2.0
      15128203Updated Dec 6, 2025Dec 6, 2025
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.