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    117 repositories

    • bossdb-collab-notebooks

      Public
      Collection of public notebooks for all projects on BossDB
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•2•0•Updated Apr 19, 2026Apr 19, 2026

    • ember-dandi-access-summaries

      Public
      Summaries of access stats (full downloads & streaming) for each EMBER-Dandiset on the EMBER archive.
      bbqs-ember
      bbqs-ember
      0•0•1•0•Updated Apr 18, 2026Apr 18, 2026

    • BBQS-EMBER-docs

      Public
      EMBER Documentation
      bbqs-ember
      bbqs-ember
      0•0•4•1•Updated Apr 17, 2026Apr 17, 2026

    • ffn

      Public
      Flood-Filling Networks for instance segmentation in 3d volumes.
      Python
      •
      Apache License 2.0
      •103•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • BBQS-EMBER-web

      Public
      BBQS EMBER Archive web app
      bbqs-ember
      bbqs-ember
      Vue
      •2•1•12•4•Updated Apr 16, 2026Apr 16, 2026

    • colocar

      Public
      tools for sparse human annotation of three-dimensional [neuroscience] datasets
      neuroscienceweb-applicationground-truth
      neuroscienceweb-applicationground-truthbossdbjhuaplsparse-annotations
      JavaScript
      •0•4•2•63•Updated Apr 15, 2026Apr 15, 2026

    • neuvue-app

      Public
      MICrONS Proofreading App
      JavaScript
      •
      Apache License 2.0
      •2•1•14•1•Updated Apr 10, 2026Apr 10, 2026

    • sleap-docker-container

      Public
      Containerized version of SLEAP
      Shell
      •0•0•7•0•Updated Apr 10, 2026Apr 10, 2026

    • npyjs

      Public
      Read numpy .npy files in JavaScript
      nodejsjavascriptnumpy
      nodejsjavascriptnumpy3dnpyjhuaplnpy-files
      TypeScript
      •
      Apache License 2.0
      •24•97•6•0•Updated Apr 7, 2026Apr 7, 2026

    • pennsieve-env-var-test

      Public
      Simple example to test setting environment variables through a Pennsieve application
      Dockerfile
      •0•0•0•0•Updated Apr 6, 2026Apr 6, 2026

    • BBQS-EMBER-Data-Model

      Public
      Core repository for the EMBER ARCHIVE
      bbqs-ember
      bbqs-ember
      Mermaid
      •2•0•1•1•Updated Mar 31, 2026Mar 31, 2026

    • dandi-archive

      Public
      EMBER - DANDI API server and Web app
      bbqs-ember
      bbqs-ember
      Python
      •
      Apache License 2.0
      •20•2•6•0•Updated Mar 26, 2026Mar 26, 2026

    • dandi-infrastructure

      Public
      A repository to collect docs/issues on DANDI project infrastructure for Ember
      bbqs-ember
      bbqs-ember
      HCL
      •
      Apache License 2.0
      •9•0•7•0•Updated Mar 24, 2026Mar 24, 2026

    • grand

      Public
      Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.
      sqlserverlessgraph
      sqlserverlessgraphgraph-algorithmsgraphsneptunedynamodbnetworkxgraph-theorygraph-database
      Python
      •
      Apache License 2.0
      •8•114•6•0•Updated Mar 20, 2026Mar 20, 2026

    • pennsieve-docker-test

      Public
      "Hello world" example of Github repository to integrate as a Pennsieve application
      Python
      •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • bossdb-rag-chatbot

      Public
      A Language Interface to the BossDB Ecosystem
      Python
      •
      Apache License 2.0
      •0•1•6•3•Updated Mar 12, 2026Mar 12, 2026

    • bossypaints

      Public
      Web-based dense annotation tool for connectomics
      Svelte
      •
      Apache License 2.0
      •0•3•8•0•Updated Mar 3, 2026Mar 3, 2026

    • neuvue-manage

      Public
      Resources and documentation to create and manage proofreading tasks on NeuVue
      Jupyter Notebook
      •
      Apache License 2.0
      •1•2•0•0•Updated Feb 23, 2026Feb 23, 2026

    • igneous

      Public
      Python pipeline for Neuroglancer compatible Downsampling, Meshing, Remapping, and more. Originally by Nacho and Will.
      Python
      •
      GNU General Public License v3.0
      •24•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • v1dd-transfer-scratch

      Public
      Scratch repository for v1dd transfer
      Shell
      •0•0•0•0•Updated Feb 20, 2026Feb 20, 2026

    • cloud-files

      Public
      Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •1.1k•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • Motif-Discovery

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

    • bossdb_cookbook

      Public
      The BossDB Cookbook is a collection of introductory notebooks and examples for interfacing with the BossDB system.
      Jupyter Notebook
      •0•6•1•1•Updated Jan 16, 2026Jan 16, 2026

    • BBQS-EMBER-cookbook

      Public
      BBQS EMBER Cookbook
      bbqs-ember
      bbqs-ember
      0•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • dotmotif

      Public
      A performant, powerful query framework to search for network motifs
      pythonneo4jgraph
      pythonneo4jgraphnetworkxgraph-databaseconnectomicsquery-languageconnectomemotif-discoverygraph-matching
      Python
      •
      Apache License 2.0
      •10•91•2•0•Updated Jan 8, 2026Jan 8, 2026

    • BENCHMARK-Metadata

      Public
      Metadata specification and upload instructions for BossDB images, experiments, and annotations
      1•2•5•2•Updated Dec 29, 2025Dec 29, 2025

    • neuvue-queue

      Public
      TypeScript
      •
      Apache License 2.0
      •0•1•6•1•Updated Dec 24, 2025Dec 24, 2025

    • precomputed-rs

      Public
      Rust
      •
      Apache License 2.0
      •0•0•1•0•Updated Dec 9, 2025Dec 9, 2025

    • grand-cypher

      Public
      Implementation of the Cypher language for searching NetworkX graphs
      pythonneo4jgraph
      pythonneo4jgraphnetworkxgraph-databasenetworkscyphergrand
      Python
      •
      Apache License 2.0
      •15•128•20•3•Updated Dec 6, 2025Dec 6, 2025
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