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21 repositories

cocoa
Public
A configurable collator and tokenizer
tokenization data-collation generative-event-models
tokenization data-collation generative-event-models
Python
•
MIT License
•0•1•0•0•Updated Apr 20, 2026Apr 20, 2026
cotorra
Public
A configurable trainer for generative event models
model-training generative-event-models
model-training generative-event-models
Python
•
MIT License
•0•0•0•0•Updated Apr 20, 2026Apr 20, 2026
input-representation-benchmark
Public
Python
•
MIT License
•0•0•0•0•Updated Apr 18, 2026Apr 18, 2026
fms-ehrs
Public
code for tokenizing, training, & fine-tuning models / running predictions
Python
•
MIT License
•1•3•0•0•Updated Apr 18, 2026Apr 18, 2026
clif-multimodal-fm-protoecg
Public
Python
•1•0•0•1•Updated Feb 25, 2026Feb 25, 2026
bbjlab.github.io
Public
CSS
•3•1•0•0•Updated Jan 15, 2026Jan 15, 2026
Quantifying-Surprise-EHRs
Public
Quantifying surprise in clinical care
electronic-health-records foundation-models surprisal
electronic-health-records foundation-models surprisal information-quantification
Python
•
MIT License
•2•2•0•0•Updated Dec 31, 2025Dec 31, 2025
data-leakage
Public
Jupyter Notebook
•0•0•0•0•Updated Dec 18, 2025Dec 18, 2025
ethos-paper
Public
Jupyter Notebook
•
MIT License
•25•0•0•0•Updated Dec 18, 2025Dec 18, 2025
fms-ehrs-flwr
Public
Python
•0•3•0•0•Updated Oct 21, 2025Oct 21, 2025
protoecgnet
Public
Case-based interpretable deep learning for ECG classification. This code implements ProtoECGNet from the following paper: "ProtoECGNet: Case-Based Interpretabl…
machine-learning medicine prototype
machine-learning medicine prototype multi-label-classification interpretability ecg-classification contrastive-learning prototype-learning prototype-based-models
Jupyter Notebook
•
MIT License
•9•31•0•0•Updated Oct 8, 2025Oct 8, 2025
CLIF-MIMIC
Public
This repository provides the workflow and code to convert the MIMIC IV dataset into the Common Longitudinal ICU data Format (CLIF)
Jupyter Notebook
•18•0•0•0•Updated Jul 7, 2025Jul 7, 2025
protoecgnet-inference
Public
Case-based interpretable deep learning for ECG classification. This code implements ProtoECGNet from the following paper: "ProtoECGNet: Case-Based Interpretabl…
Python
•
MIT License
•9•0•2•0•Updated Jun 25, 2025Jun 25, 2025
FMs-EHRs-Rep-Dynamics-and-Transfer
Public
Code supplement for "Foundation models for electronic health records: representation dynamics and transferability"
representation-learning electronic-health-records foundation-models
representation-learning electronic-health-records foundation-models
Python
•
MIT License
•2•7•0•0•Updated Apr 11, 2025Apr 11, 2025
clinical_validation
Public
Vue
•0•0•0•0•Updated Apr 7, 2025Apr 7, 2025
clinical-synthetic-data-distil
Public
Jupyter Notebook
•
MIT License
•3•2•0•0•Updated Nov 7, 2024Nov 7, 2024
annotation-ui
Public
JavaScript
•1•2•0•0•Updated Nov 5, 2024Nov 5, 2024
PD_Progression
Public
Jupyter Notebook
•
MIT License
•0•1•0•0•Updated Oct 29, 2024Oct 29, 2024
mlflow_cors
Public
MLFlow plugin for enabling cross-origin requests
Python
•0•0•0•0•Updated Oct 23, 2024Oct 23, 2024
fairness-evaluator
Public
Jupyter Notebook
•0•0•0•0•Updated Sep 16, 2024Sep 16, 2024
eval-dashboard
Public
Evaluate and monitor ML models from validation to production. Join our Discord: https://discord.com/invite/xZjKRaNp8b
Jupyter Notebook
•
Apache License 2.0
•822•1•0•0•Updated Oct 26, 2023Oct 26, 2023

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bbj-lab

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All

21 repositories

cocoa

cotorra

input-representation-benchmark

fms-ehrs

clif-multimodal-fm-protoecg

bbjlab.github.io

Quantifying-Surprise-EHRs

data-leakage

ethos-paper

fms-ehrs-flwr

protoecgnet

CLIF-MIMIC

protoecgnet-inference

FMs-EHRs-Rep-Dynamics-and-Transfer

clinical_validation

clinical-synthetic-data-distil

annotation-ui

PD_Progression

mlflow_cors

fairness-evaluator

eval-dashboard

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Repositories list

21 repositories