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    15 repositories

    • liminal-orm

      Public
      ORM and toolkit to help keep your Benchling schemas and downstream dependencies in sync.
      sqlalchemyormlims
      sqlalchemyormlimsalembicbenchling
      Python
      •
      Apache License 2.0
      •10•53•18•3•Updated Apr 22, 2026Apr 22, 2026

    • dynopsi

      Public
      This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.
      Python
      •0•22•0•0•Updated Mar 24, 2026Mar 24, 2026

    • phi-cli

      Public
      Dyno Phi CLI for agentic protein design tasks
      Python
      •
      MIT License
      •0•2•0•0•Updated Mar 18, 2026Mar 18, 2026

    • openfold

      Public
      Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
      Python
      •
      Apache License 2.0
      •670•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • hera-workflows

      Public
      Hera is an Argo Workflows Python SDK. Hera aims to make workflow construction and submission easy and accessible to everyone! Hera abstracts away workflow setup…
      Python
      •
      MIT License
      •123•0•0•0•Updated Jun 22, 2023Jun 22, 2023

    • qdldl-python

      Public
      Python interface to the QDLDL(https://github.com/osqp/qdldl) free LDL factorization routine for quasi-definite linear systems
      C
      •
      Apache License 2.0
      •23•0•0•0•Updated Mar 21, 2023Mar 21, 2023

    • CellProfiler

      Public
      An open-source application for biological image analysis
      Python
      •
      Other
      •419•0•0•0•Updated Mar 14, 2023Mar 14, 2023

    • centrosome

      Public
      An open source image processing library
      Python
      •
      Other
      •38•0•0•0•Updated Mar 13, 2023Mar 13, 2023

    • opencv-python

      Public
      Automated CI toolchain to produce precompiled opencv-python, opencv-python-headless, opencv-contrib-python and opencv-contrib-python-headless packages.
      Shell
      •
      MIT License
      •1k•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • DeepSpeed

      Public
      DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.
      Python
      •
      MIT License
      •4.8k•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • ColabFold

      Public
      Making Protein folding accessible to all!
      Jupyter Notebook
      •
      MIT License
      •714•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • editdistance

      Public
      Fast implementation of the edit distance(Levenshtein distance)
      C++
      •
      MIT License
      •74•0•0•0•Updated Dec 18, 2022Dec 18, 2022

    • weighted-levenshtein

      Public
      Weighted Levenshtein library
      Python
      •
      MIT License
      •27•0•0•0•Updated Oct 14, 2022Oct 14, 2022

    • ivar

      Public
      iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
      C++
      •
      GNU General Public License v3.0
      •44•0•0•0•Updated Oct 14, 2022Oct 14, 2022

    • plotly-calplot

      Public
      The easiest and best looking Calendar Heatmap you'll find, made with Plotly.
      Python
      •18•0•0•0•Updated Sep 21, 2022Sep 21, 2022
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