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    118 repositories

    • epinow2julia

      Public
      EpiNow2 R package with Julia/Turing.jl backend
      R
      •
      Other
      •0•3•1•15•Updated Apr 21, 2026Apr 21, 2026

    • epiforecasts.github.io

      Public
      Quarto website for EpiForecasts
      HTML
      •7•5•5•3•Updated Apr 20, 2026Apr 20, 2026

    • scoringutils

      Public
      Utilities for Scoring and Assessing Predictions
      forecastingr-packageforecast-evaluation
      forecastingr-packageforecast-evaluation
      R
      •
      Other
      •25•61•97•21•Updated Apr 20, 2026Apr 20, 2026

    • EpiBranch.jl

      Public
      Branching process models for infectious disease epidemiology
      Julia
      •0•2•0•0•Updated Apr 20, 2026Apr 20, 2026

    • epinow2cast

      Public
      R
      •
      Other
      •0•1•0•1•Updated Apr 20, 2026Apr 20, 2026

    • EpiNow2

      Public
      Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
      open-sourcerstatsstan
      open-sourcerstatsstangaussian-processesbackcalculationcovid-19reproduction-number
      R
      •
      Other
      •38•134•54•13•Updated Apr 18, 2026Apr 18, 2026

    • evalbehtransmission

      Public
      Evaluation of nowcasting and forecasting using behavioural data including CoMix and Google Mobility
      R
      •
      MIT License
      •0•0•18•1•Updated Apr 16, 2026Apr 16, 2026

    • slack_bot

      Public
      The source code for our friendly EpiForecasts bot
      R
      •
      Other
      •0•2•0•0•Updated Apr 16, 2026Apr 16, 2026

    • cityforecasts

      Public
      R scripts to generate city-level forecasts
      R
      •1•1•16•0•Updated Apr 16, 2026Apr 16, 2026

    • ringbp

      Public
      Simulate infectious disease transmission with contact tracing
      transmissioncontrolling-outbreaks
      transmissioncontrolling-outbreaks
      R
      •
      Other
      •12•17•23•2•Updated Apr 15, 2026Apr 15, 2026

    • socialmixr

      Public
      Derive social mixing matrices from survey data.
      rr-package
      rr-package
      R
      •
      Other
      •14•43•10•1•Updated Apr 13, 2026Apr 13, 2026

    • daily-vs-weekly-forecast-eval

      Public
      Evaluation of forecasts generated with daily and weekly inputs
      R
      •0•3•8•1•Updated Apr 12, 2026Apr 12, 2026

    • responsible-modelling

      Public
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Apr 9, 2026Apr 9, 2026

    • evalvariantnowcasthub

      Public
      A code repository to characterise and evaluate data and nowcasts on SARS-CoV-2 variant dynamics in the U.S. from the U.S. variant nowcast hub
      R
      •
      MIT License
      •2•3•5•1•Updated Mar 31, 2026Mar 31, 2026

    • contactsurveys

      Public
      Download and access social contact data
      R
      •
      Other
      •0•2•0•1•Updated Mar 30, 2026Mar 30, 2026

    • delayscompare

      Public
      Assessing the impact of misspecifying epidemiological distributions on predictive performance.
      R
      •
      GNU General Public License v3.0
      •1•2•1•1•Updated Mar 25, 2026Mar 25, 2026

    • covid-us-forecasts

      Public
      Forecasting Covid-19 in the US
      forecastingunited-statescoronavirus
      forecastingunited-statescoronaviruscovid-19
      HTML
      •
      MIT License
      •3•8•12•0•Updated Mar 22, 2026Mar 22, 2026

    • outbreak-theme

      Public
      Julia
      •1•1•1•0•Updated Mar 16, 2026Mar 16, 2026

    • epiforecasts.r-universe.dev

      Public
      epiforecasts R universe
      infrastructure
      infrastructure
      0•2•0•0•Updated Mar 11, 2026Mar 11, 2026

    • evalwwforecasts

      Public
      Evaluation of forecasts with and without incorporating wastewater
      R
      •
      Other
      •1•4•5•4•Updated Mar 11, 2026Mar 11, 2026

    • llm-epi-composition

      Public
      Evaluating LLM ability to compose epidemic models with and without validated components
      R
      •0•3•0•0•Updated Mar 5, 2026Mar 5, 2026

    • lopensemble

      Public
      Model stacking for predictive ensembles
      forecastingensemblesstacking
      forecastingensemblesstackingcrps
      HTML
      •
      MIT License
      •3•7•3•1•Updated Mar 2, 2026Mar 2, 2026

    • qrensemble

      Public
      Function and example for quantile regression average
      R
      •
      MIT License
      •0•3•1•0•Updated Mar 2, 2026Mar 2, 2026

    • dist.spec

      Public
      Define probability distributions with certain or uncertain parameters
      R
      •
      Other
      •0•1•2•2•Updated Mar 2, 2026Mar 2, 2026

    • eval-by-method

      Public
      Thematic analysis of model performance in the European COVID-19 Forecast Hub
      R
      •
      Other
      •0•6•26•2•Updated Feb 24, 2026Feb 24, 2026

    • forecastbaselines

      Public
      forecastbaselines: R interface to ForecastBaselines.jl
      R
      •
      Other
      •0•0•1•1•Updated Feb 13, 2026Feb 13, 2026

    • quantgen

      Public
      Tools for generalized quantile modeling
      R
      •9•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • RtD3

      Public archive
      Rt visualisation in D3
      JavaScript
      •
      Other
      •2•6•0•0•Updated Feb 3, 2026Feb 3, 2026

    • size-adjusted-model-importance

      Public
      MIT License
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • actions

      Public
      Reusable GitHub Actions for epiforecasts projects
      0•0•0•0•Updated Dec 7, 2025Dec 7, 2025
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