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    • Multi-agentic AI system for Drug Repurposing
      Jupyter Notebook
      01800Updated Apr 19, 2026Apr 19, 2026
    • Python
      MIT License
      0000Updated Apr 16, 2026Apr 16, 2026
    • Material for the Big Data in life science course
      TeX
      3400Updated Apr 15, 2026Apr 15, 2026
    • AI Agent for Drug Repurposing
      Jupyter Notebook
      0100Updated Apr 11, 2026Apr 11, 2026
    • squid

      Public
      C
      52360Updated Apr 10, 2026Apr 10, 2026
    • robotlab

      Public
      Cell painting and imaging with robots
      Python
      MIT License
      11340Updated Apr 9, 2026Apr 9, 2026
    • The Static (Hugo) website for pharmb.io
      JavaScript
      7305Updated Mar 31, 2026Mar 31, 2026
    • imagedb

      Public
      Image database for pharmbio microscope images
      JavaScript
      0593Updated Mar 24, 2026Mar 24, 2026
    • version 2 of cppipeline
      Python
      0000Updated Mar 18, 2026Mar 18, 2026
    • service that uploads images to s3
      Python
      0000Updated Mar 2, 2026Mar 2, 2026
    • cplogd

      Public
      Code related to the conformal prediction log D project
      CSS
      1202Updated Mar 2, 2026Mar 2, 2026
    • JavaScript
      0010Updated Feb 21, 2026Feb 21, 2026
    • Python
      0000Updated Feb 19, 2026Feb 19, 2026
    • Supporting scripts and code for Cell Painting in 3D spheroids
      Jupyter Notebook
      MIT License
      0000Updated Dec 19, 2025Dec 19, 2025
    • MCP server for SPECS dataset
      Python
      0000Updated Dec 16, 2025Dec 16, 2025
    • plaid

      Public
      PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.
      Jupyter Notebook
      Apache License 2.0
      51702Updated Nov 27, 2025Nov 27, 2025
    • ULLA AI in Drug Discovery course material
      TeX
      0000Updated Nov 17, 2025Nov 17, 2025
    • Deep Learning Notebooks adapted for some of our courses by David Holmberg - including PB_SEQ, ULLA, Ai4DD etc
      Jupyter Notebook
      1000Updated Nov 9, 2025Nov 9, 2025
    • Deep Learning Notebooks adapted for some of our courses by David Holmberg - including PB_SEQ, ULLA, Ai4DD etc
      Jupyter Notebook
      0000Updated Nov 6, 2025Nov 6, 2025
    • Docker containers for interactive notebook environments for rancher cluster
      Dockerfile
      1201Updated Sep 8, 2025Sep 8, 2025
    • This repository contains code and data associated with the manuscript "Morphological cell profiling for drug repurposing against SARS-CoV-2 infection"
      Jupyter Notebook
      0000Updated Sep 5, 2025Sep 5, 2025
    • Mustache
      0110Updated Aug 26, 2025Aug 26, 2025
    • A series of LaTeX templates used by us
      TeX
      0000Updated Jul 24, 2025Jul 24, 2025
    • Analysis scripts for single-cell celldeath publication
      Jupyter Notebook
      0200Updated Jun 2, 2025Jun 2, 2025
    • CellViewer, a customizable, zoomable widget for fluorescent microscopy images
      Jupyter Notebook
      0200Updated May 26, 2025May 26, 2025
    • Big data course, Deep learning repo
      Jupyter Notebook
      0200Updated May 21, 2025May 21, 2025
    • Data analysis and models for predicting phospholipidosis readouts from cell painting
      Jupyter Notebook
      0100Updated May 6, 2025May 6, 2025
    • Implementation of algorithm to automatically detect spheroid base Z plane in multiwell microscopy.
      Jupyter Notebook
      MIT License
      1000Updated Feb 12, 2025Feb 12, 2025
    • Deep Learning Notebooks adapted for some of our courses by David Holmberg - including PB_SEQ, ULLA, Ai4DD etc
      Jupyter Notebook
      0000Updated Feb 3, 2025Feb 3, 2025
    • 0000Updated Dec 21, 2024Dec 21, 2024
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