Repositories list

• library

  Public

  qiime2/library’s past year of commit activity
  A website for sharing QIIME 2 Plugins

  Svelte

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  BSD 3-Clause "New" or "Revised" License

  •22 forks•00 stars•33 issues•22 pull requests•Updated Apr 20, 2026Apr 20, 2026

• distributions

  Public

  qiime2/distributions’s past year of commit activity
  Makefile

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  BSD 3-Clause "New" or "Revised" License

  •1111 forks•55 stars•55 issues•33 pull requests•Updated Apr 17, 2026Apr 17, 2026

• library-catalog

  Public

  qiime2/library-catalog’s past year of commit activity
  Stores a list of the repos that are included in the QIIME 2 library

  BSD 3-Clause "New" or "Revised" License

  •1010 forks•00 stars•22 issues•22 pull requests•Updated Apr 17, 2026Apr 17, 2026

• midpoint_check

  Public

  qiime2/midpoint_check’s past year of commit activity
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• q2view

  Public

  qiime2/q2view’s past year of commit activity
  A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

  TypeScript

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  BSD 3-Clause "New" or "Revised" License

  •33 forks•11 star•22 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• q2

  Public

  qiime2/q2’s past year of commit activity
  Python

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  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-longitudinal

  Public

  qiime2/q2-longitudinal’s past year of commit activity
  QIIME 2 plugin for paired sample comparisons

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •1717 forks•99 stars•2828 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• q2-cutadapt

  Public

  qiime2/q2-cutadapt’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •1818 forks•44 stars•55 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• q2templates

  Public

  qiime2/q2templates’s past year of commit activity
  Design template package for QIIME 2 Plugins

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •1515 forks•44 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-mystery-stew

  Public

  qiime2/q2-mystery-stew’s past year of commit activity
  This plugin exists to define integration tests between interfaces and the framework.

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •66 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-sapienns

  Public

  qiime2/q2-sapienns’s past year of commit activity
  hacktoberfestqiime2-plugin

  hacktoberfestqiime2-plugin

  Python

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  BSD 3-Clause "New" or "Revised" License

  •22 forks•11 star•11 issue•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-vizard

  Public

  qiime2/q2-vizard’s past year of commit activity
  The first choice of wizard lizards for interactive, generalized microbiome data visualization!

  Python

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  BSD 3-Clause "New" or "Revised" License

  •1313 forks•11 star•88 issues•22 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-phylogeny

  Public

  qiime2/q2-phylogeny’s past year of commit activity
  Phylogenetic reconstruction, and operations on phylogenetic trees.

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •2020 forks•55 stars•22 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-dada2

  Public

  qiime2/q2-dada2’s past year of commit activity
  QIIME 2 plugin wrapping DADA2

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •3838 forks•2323 stars•1111 issues•22 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-feature-classifier

  Public

  qiime2/q2-feature-classifier’s past year of commit activity
  QIIME 2 plugin supporting taxonomic classification

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •4040 forks•2020 stars•99 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• q2-alignment

  Public

  qiime2/q2-alignment’s past year of commit activity
  Support for multiple sequence alignment in QIIME 2.

  hacktoberfest

  hacktoberfest

  Jupyter Notebook

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  BSD 3-Clause "New" or "Revised" License

  •2323 forks•22 stars•66 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• q2-quality-filter

  Public

  qiime2/q2-quality-filter’s past year of commit activity
  Quality filtering for QIIME2

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •1414 forks•11 star•33 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-taxa

  Public

  qiime2/q2-taxa’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •3030 forks•33 stars•4343 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• q2-metadata

  Public

  qiime2/q2-metadata’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •1818 forks•33 stars•66 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-demux

  Public

  qiime2/q2-demux’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •2121 forks•11 star•99 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• q2-diversity

  Public
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •4444 forks•33 stars•4444 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• q2-emperor

  Public

  qiime2/q2-emperor’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •2121 forks•11 star•44 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-boots

  Public

  qiime2/q2-boots’s past year of commit activity
  q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

  bootstrapbioinformaticsmicrobiome+ 2

  bootstrapbioinformaticsmicrobiomerarefactionqiime2

  Python

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  BSD 3-Clause "New" or "Revised" License

  •77 forks•33 stars•1010 issues•22 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-vsearch

  Public

  qiime2/q2-vsearch’s past year of commit activity
  vsearch plugin for QIIME 2

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •2121 forks•66 stars•88 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-types

  Public

  qiime2/q2-types’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •4444 forks•1717 stars•2626 issues•22 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-fragment-insertion

  Public

  qiime2/q2-fragment-insertion’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •1717 forks•1414 stars•1111 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2cli

  Public

  qiime2/q2cli’s past year of commit activity
  Command line interface for QIIME 2

  hacktoberfestq2interface

  hacktoberfestq2interface

  Python

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  BSD 3-Clause "New" or "Revised" License

  •3030 forks•2020 stars•1111 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• q2-sample-classifier

  Public

  qiime2/q2-sample-classifier’s past year of commit activity
  QIIME 2 plugin for machine learning prediction of sample data.

  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •3434 forks•66 stars•1515 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-composition

  Public

  qiime2/q2-composition’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •2929 forks•66 stars•99 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• q2-stats

  Public

  qiime2/q2-stats’s past year of commit activity
  hacktoberfest

  hacktoberfest

  Python

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  BSD 3-Clause "New" or "Revised" License

  •99 forks•11 star•44 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026