An interactive image processing program for biologists written in Python.

Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

Data and codes supporting the manuscript "Dialogue mechanisms between astrocytic and neuronal networks: a whole-brain modelling approach" by Ali et al., 2025, PCBI.

ImageJ macro for morphological analysis

stimulation of a spiking neuron-astrocyte nerwork with working memory

Pipeline for AQuA2 astrocyte calcium event analysis, normalization, and non-parametric statistical comparison across experimental groups.

Effect of APOE alleles on the glial transcriptome in normal aging and Alzheimer’s disease.

Part of a neuromodulation research skills workshop. Using MATLAB, students learn how to use image matrix analysis to automatically isolate, identify, and count cells, such as neurons and astrocytes.

Implementation of 'use case' model from the paper: Jiang, Acimovic et al. (2025) Modeling neuron-astrocyte interactions in neural networks using distributed simulation

In Alzheimer’s disease, abnormal levels of the Aβ protein aggregate together to form Aβ plaques. The response to plaques by microglial cells is characterised by changes in gene expression and an increase in cell density surrounding plaques. This set of semi-automated macros calculates both microglial density and changes in protein expression int…

Part of a neuromodulation research skill workshop. Using Python, students learn how to use image matrix analysis to automatically isolate, identify, and count cells, such as neurons and astrocytes.

A biologically plausible model of astrocyte-neuron networks in random and hub-driven connectivity