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MVP Development Merge#89

Merged
alex-sandercock merged 58 commits intomainfrom
development
Dec 22, 2024
Merged

MVP Development Merge#89
alex-sandercock merged 58 commits intomainfrom
development

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@alex-sandercock
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@alex-sandercock alex-sandercock commented Dec 22, 2024 •
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  • GWASpoly updates
  • UI updates
  • Help Page updates
  • Bug fixes
  • Added GBLUP support to the genomic prediction tabs

Cristianetaniguti and others added 30 commits September 18, 2024 18:57
@Cristianetaniguti
add LD and fitQTL #36
3c0bc11
@Cristianetaniguti
adjust tab name
4d542c6
@Cristianetaniguti
check ploidy PCA
1db6323
@Cristianetaniguti
colors always categorical PCA 3D
9d56f8a
@Cristianetaniguti
fix #62
8be91b9
@Cristianetaniguti
Merge pull request #61 from Breeding-Insight/main
0c9aeee 
Merge main branch updates
@alex-sandercock
Merge pull request #56 from Cristianetaniguti/main
a5a6852 
GWAS tab updates
@alex-sandercock
Updated version
2414f1d
@alex-sandercock
Bug with phenotype file ids
01bd5bc
@Cristianetaniguti
Merge pull request #64 from Breeding-Insight/geno_updates
a635591 
version update and GWAS bug fix
@alex-sandercock
Added Maximize option to results windows
2afdbb4
@alex-sandercock
Removed extra .vcf from output name if present
cc49743
@alex-sandercock
added tab summary info
86bbcbf
@alex-sandercock
Updated read depth input format
f8ef96e
@alex-sandercock
Sidebar updates
1fd3f67
@Cristianetaniguti
Merge pull request #67 from Breeding-Insight/geno_updates
8cb5ab1 
Updates to summary info and ui fixes
@Cristianetaniguti
Merge pull request #17 from Breeding-Insight/development
48dada1 
Development
@alex-sandercock
Added data check warning
dd9e66c
@Cristianetaniguti
organize GWAS tabs #70
6cabc78
@Cristianetaniguti
table with all QTL + only one model for fit.qtl #70
d38e38a
@alex-sandercock
Merge pull request #71 from Cristianetaniguti/main
32bc489 
Organize GWAS tabs
@alex-sandercock
Merge pull request #72 from Breeding-Insight/development
8d8866e 
Development
@alex-sandercock
Updated QTL infobox
09f001f
@alex-sandercock
Updates to GWAS output
6b89d01
@Cristianetaniguti
Merge pull request #18 from Breeding-Insight/geno_updates
d9816ab 
Geno updates
@Cristianetaniguti
Merge pull request #73 from Breeding-Insight/geno_updates
cb634c2 
GWAS updates
@alex-sandercock
Removed dosage2vcf button
b250f93
@alex-sandercock
Generalized dosage2vcf tab
5500433
@alex-sandercock
Updated Y-axis label
c1c7b48
@alex-sandercock
Merge pull request #76 from Breeding-Insight/geno_updates
96fde77 
Geno updates
alex-sandercock and others added 23 commits December 18, 2024 13:44
@alex-sandercock
Added Updates Info Button
84582bf
@alex-sandercock
UI Updates
e3fe949
@Cristianetaniguti
Merge pull request #79 from Breeding-Insight/mvp_updates
37e67d6 
UI and Logo Updates
@Cristianetaniguti
Merge pull request #80 from Breeding-Insight/development
8d571e9 
Development
@Cristianetaniguti
Merge pull request #20 from Breeding-Insight/cris_bridge
c7e6b1c 
Cris bridge
@Cristianetaniguti
update help #43
f5b9f9a
@Cristianetaniguti
adjusts
afadbd7
@Cristianetaniguti
Merge pull request #81 from Cristianetaniguti/main
5af8696 
Update help info
@alex-sandercock
Merge pull request #82 from Breeding-Insight/cris_bridge
d51c36f 
Update help
@alex-sandercock
Merge pull request #83 from Breeding-Insight/development
c586efd 
merge development branch
@alex-sandercock
GS and UI updates
9813e52
@alex-sandercock
Merge pull request #84 from Breeding-Insight/mvp_updates
1655ce5 
Mvp updates
@alex-sandercock
Check for Updates fix
f6288fa
@alex-sandercock
Added PIC calculation
05ad664
@alex-sandercock
Suppressed console output and updated warnings
15e81da
@alex-sandercock
UI Updates
0b06195
@alex-sandercock
Fixed GWAS bug
adae187
@alex-sandercock
Updated Info Dropdowns
b30e8dc
@alex-sandercock
Help Section Updates
d92cea3
@alex-sandercock
UI Updates
2958942
@alex-sandercock
Merge pull request #88 from Breeding-Insight/mvp_updates
4d75b7f 
Mvp updates
@alex-sandercock
Update README.md
af59936
@alex-sandercock
Merge branch 'main' into development
9fcb981
@alex-sandercock alex-sandercock self-assigned this Dec 22, 2024
This was linked to issues Dec 22, 2024
Add GBLUP support to GP tab #78
Closed
Fix progress bar bugs that prevent the percentages updating #85
Closed
Silence color palette warnings and all terminal output #86
Closed
Bufix GWAS tab when no QTL is found #87
Closed
@alex-sandercock alex-sandercock merged commit c55733a into main Dec 22, 2024
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@alex-sandercock @Cristianetaniguti