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Enhance BWA easyblock to copy includes and libraries#2417

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ocaisa merged 6 commits intoeasybuilders:developfrom
jfgrimm:20210511160730_new_pr_jMmgQHRiSv
May 12, 2021
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Enhance BWA easyblock to copy includes and libraries#2417
ocaisa merged 6 commits intoeasybuilders:developfrom
jfgrimm:20210511160730_new_pr_jMmgQHRiSv

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@jfgrimm jfgrimm commented May 11, 2021

(created using eb --new-pr)
libbwa.a is already built by the Makefile, this just copies the library and header files into the installdir.

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It would be good to add some additional checks in the sanity_check_step for (some of?) the new includes and libraries.

Comment thread easybuild/easyblocks/b/bwa.py Outdated
@boegel boegel added this to the next release (4.3.5?) milestone May 12, 2021
@jfgrimm jfgrimm requested a review from ocaisa May 12, 2021 09:53
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ocaisa commented May 12, 2021

Test report by @ocaisa

Overview of tested easyconfigs (in order)

  • SUCCESS BWA-0.7.17-GCC-10.2.0.eb
  • SUCCESS BWA-0.7.17-GCC-9.3.0.eb
  • SUCCESS BWA-0.7.17-GCC-8.3.0.eb

Build succeeded for 3 out of 3 (3 easyconfigs in total)
generoso - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz, Python 3.6.8
See https://gist.github.com/89807204122edebc1a1f46588c109578 for a full test report.

Comment thread easybuild/easyblocks/b/bwa.py Outdated
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ocaisa commented May 12, 2021

Test report by @ocaisa

Overview of tested easyconfigs (in order)

  • SUCCESS BWA-0.7.17-GCC-10.2.0.eb
  • SUCCESS BWA-0.7.17-GCC-9.3.0.eb
  • SUCCESS BWA-0.7.17-GCC-8.3.0.eb

Build succeeded for 3 out of 3 (3 easyconfigs in total)
generoso - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz, Python 3.6.8
See https://gist.github.com/3f5fa7f146e48534e2675c8944454712 for a full test report.

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LGTM

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ocaisa commented May 12, 2021

Thanks @jfgrimm !

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3 participants