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{bio}[GCC/9.3.0] freebayes v1.3.5 w/ Python 3.8.2#12859

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branfosj merged 3 commits intoeasybuilders:developfrom
jfgrimm:20210513163642_new_pr_freebayes135
Aug 23, 2021
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{bio}[GCC/9.3.0] freebayes v1.3.5 w/ Python 3.8.2#12859
branfosj merged 3 commits intoeasybuilders:developfrom
jfgrimm:20210513163642_new_pr_freebayes135

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@jfgrimm jfgrimm commented May 13, 2021

(created using eb --new-pr)
Requires vcflib (#12841) and SeqLib (#12856)

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adding easyconfigs: freebayes-1.3.5-GCC-9.3.0-Python-3.8.2.eb and pat…
6bbfe01 
…ches: freebayes-1.3.5_find-external-libs.patch, freebayes-1.3.5_fix-includes.patch, freebayes-1.3.5_install-libs-headers.patch
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@Micket Micket added the new label May 14, 2021
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Micket requested changes May 14, 2021
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Comment thread easybuild/easyconfigs/f/freebayes/freebayes-1.3.5_find-external-libs.patch
@Micket Micket added this to the 4.x milestone May 14, 2021
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@jfgrimm jfgrimm requested a review from Micket May 17, 2021 09:28
@jfgrimm jfgrimm mentioned this pull request May 18, 2021
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@jfgrimm jfgrimm closed this Jun 8, 2021
@jfgrimm jfgrimm reopened this Jun 8, 2021
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verdurin commented Jun 8, 2021

Test report by @verdurin
FAILED
Build succeeded for 12 out of 14 (1 easyconfigs in total)
nuc.lan - Linux Fedora 33, x86_64, Intel(R) Core(TM) i7-8650U CPU @ 1.90GHz, Python 3.9.4
See https://gist.github.com/9715fed5dbe305d3db18fe67519794d6 for a full test report.

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jfgrimm commented Jun 8, 2021 •
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@verdurin you need to rebuild BWA, since the easyblock was updated

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verdurin commented Jun 8, 2021

Test report by @verdurin
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
nuc.lan - Linux Fedora 33, x86_64, Intel(R) Core(TM) i7-8650U CPU @ 1.90GHz, Python 3.9.4
See https://gist.github.com/b62c2a21ec717f9b98f91b2b58631225 for a full test report.

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verdurin commented Jun 8, 2021

Test report by @verdurin
SUCCESS
Build succeeded for 15 out of 15 (1 easyconfigs in total)
easybuild-c7.novalocal - Linux centos linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/4cd89bdcde203c8a577950cfc710c478 for a full test report.

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verdurin commented Jun 8, 2021

@Micket are you happy with the changes now?

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branfosj commented Aug 23, 2021

@boegelbot please test @ generoso

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branfosj commented Aug 23, 2021

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux RHEL 8.3, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/47b42dcaa785ab8ebcab1afd7817c300 for a full test report.

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boegelbot commented Aug 23, 2021

@branfosj: Request for testing this PR well received on generoso

PR test command 'EB_PR=12859 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_12859 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 18184

Test results coming soon (I hope)...

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it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Aug 23, 2021

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
generoso-c1-s-4 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/ca9246a5969b26d64c2eac1b8241d40f for a full test report.

@branfosj branfosj modified the milestones: 4.x, next release (4.4.2?) Aug 23, 2021
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branfosj commented Aug 23, 2021

Going in, thanks @jfgrimm!

@branfosj branfosj merged commit 09474c7 into easybuilders:develop Aug 23, 2021
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