Skip to content

add RTree module to SQLite 3.50.1, required by GDAL-3.11.3#23765

Merged
boegel merged 1 commit intoeasybuilders:developfrom
pavelToman:20250901115336_new_pr_SQLite3501
Sep 3, 2025
Merged

add RTree module to SQLite 3.50.1, required by GDAL-3.11.3#23765
boegel merged 1 commit intoeasybuilders:developfrom
pavelToman:20250901115336_new_pr_SQLite3501

Conversation

@pavelToman
Copy link
Copy Markdown
Collaborator

@pavelToman pavelToman commented Sep 1, 2025 •
edited by boegel
Loading

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#593

edit: without this, building GDAL fails in configure step with:

-- Looking for sqlite3ext.h
-- Looking for sqlite3ext.h - found
CMake Error at cmake/helpers/CheckDependentLibraries.cmake:276 (message):

  /apps/RHEL9/zen2-ib/software/SQLite/3.50.1-GCCcore-14.3.0/lib/libsqlite3.so
  lacks the RTree extension! GPKG will not behave properly.  Define the
  ACCEPT_MISSING_SQLITE3_RTREE:BOOL=ON CMake variable if you want to build
  despite this limitation.
Call Stack (most recent call first):
  ogr/ogrsf_frmts/gpkg/CMakeLists.txt:19 (check_sqlite3_rtree)


-- Configuring incomplete, errors occurred!

@github-actions github-actions Bot added the change label Sep 1, 2025
@pavelToman
Copy link
Copy Markdown
Collaborator Author

pavelToman commented Sep 1, 2025

@boegelbot please test @ jsc-zen3

@boegelbot
Copy link
Copy Markdown
Collaborator

boegelbot commented Sep 1, 2025

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23765 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23765 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 7802

Test results coming soon (I hope)...

Details

- notification for comment with ID 3241685427 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@Thyre Thyre added the 2025b issues & PRs related to 2025b common toolchains label Sep 1, 2025
@boegelbot
Copy link
Copy Markdown
Collaborator

boegelbot commented Sep 1, 2025

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/7efd7559d43736616a3a266be2d8a770 for a full test report.

@pavelToman pavelToman mentioned this pull request Sep 1, 2025
Merged
@Thyre
Copy link
Copy Markdown
Collaborator

Thyre commented Sep 2, 2025

@boegelbot please test @ jsc-zen3
EB_ARGS="SQLite-3.50.1-GCCcore-14.3.0.eb PROJ-9.6.2-GCCcore-14.3.0.eb Python-3.13.5-GCCcore-14.3.0.eb SOCI-4.1.2-intel-compilers-2025.2.0.eb util-linux-2.41-GCCcore-14.3.0.eb --installpath=/tmp/$USER/ecpr-23765"

@boegelbot
Copy link
Copy Markdown
Collaborator

boegelbot commented Sep 2, 2025

@Thyre: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23765 EB_ARGS="SQLite-3.50.1-GCCcore-14.3.0.eb PROJ-9.6.2-GCCcore-14.3.0.eb Python-3.13.5-GCCcore-14.3.0.eb SOCI-4.1.2-intel-compilers-2025.2.0.eb util-linux-2.41-GCCcore-14.3.0.eb --installpath=/tmp/$USER/ecpr-23765" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23765 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 7821

Test results coming soon (I hope)...

Details

- notification for comment with ID 3244826244 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@boegelbot
Copy link
Copy Markdown
Collaborator

boegelbot commented Sep 2, 2025

Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
jsczen3c4.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/664973413432cbec1ed45c58d6a70379 for a full test report.

@boegel boegel changed the title add RTree module to SQLite - requiered by GDAL-3.11.3 add RTree module to SQLite - required by GDAL-3.11.3 Sep 2, 2025
@boegel boegel added enhancement and removed change labels Sep 3, 2025
@boegel boegel added this to the next release (5.1.2) milestone Sep 3, 2025
@boegel
Copy link
Copy Markdown
Member

boegel commented Sep 3, 2025

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3512.doduo.os - Linux RHEL 9.4, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.9.18
See https://gist.github.com/boegel/deed46c4181a637c0cde3ed6ac10a2d8 for a full test report.

boegel
boegel approved these changes Sep 3, 2025
View reviewed changes
Copy link
Copy Markdown
Member

@boegel boegel left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm

@boegel boegel changed the title add RTree module to SQLite - required by GDAL-3.11.3 add RTree module to SQLite 3.50.1, required by GDAL-3.11.3 Sep 3, 2025
@boegel
Copy link
Copy Markdown
Member

boegel commented Sep 3, 2025

Going in, thanks @pavelToman!

@boegel boegel merged commit 867c1f2 into easybuilders:develop Sep 3, 2025
8 checks passed
@Thyre Thyre mentioned this pull request Sep 25, 2025
Merged
@branfosj branfosj mentioned this pull request Nov 6, 2025
Merged
1 task
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

@boegel boegel boegel approved these changes

Assignees

No one assigned

Labels

2025b issues & PRs related to 2025b common toolchains enhancement

Projects

None yet

Milestone

5.1.2

Development

Successfully merging this pull request may close these issues.

osmium

4 participants

@pavelToman @boegelbot @Thyre @boegel