{data,tools}[foss/2025b] osmium-tool v1.18.0, libosmium v2.22.0, GDAL v3.11.3, Armadillo v15.0.1, netCDF v4.9.3, protozero v1.8.1, Xerces-C++ v3.3.0 by pavelToman · Pull Request #23768 · easybuilders/easybuild-easyconfigs

pavelToman · 2025-09-01T13:25:08Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#593

requires:

…0-foss-2025b.eb, GDAL-3.11.3-foss-2025b.eb, Armadillo-15.0.1-foss-2025b.eb, Xerces-C++-3.3.0-GCCcore-14.3.0.eb, netCDF-4.9.3-gompi-2025b.eb, protozero-1.8.1-foss-2025b.eb

github-actions · 2025-09-01T13:25:43Z

Updated software `Armadillo-15.0.1-foss-2025b.eb`

Diff against Armadillo-14.6.0-foss-2025a.eb

easybuild/easyconfigs/a/Armadillo/Armadillo-14.6.0-foss-2025a.eb

diff --git a/easybuild/easyconfigs/a/Armadillo/Armadillo-14.6.0-foss-2025a.eb b/easybuild/easyconfigs/a/Armadillo/Armadillo-15.0.1-foss-2025b.eb
index 92c5874867..7b93cd9b7c 100644
--- a/easybuild/easyconfigs/a/Armadillo/Armadillo-14.6.0-foss-2025a.eb
+++ b/easybuild/easyconfigs/a/Armadillo/Armadillo-15.0.1-foss-2025b.eb
@@ -1,21 +1,21 @@
 easyblock = 'CMakeMake'
 
 name = 'Armadillo'
-version = '14.6.0'
+version = '15.0.1'
 
 homepage = 'https://arma.sourceforge.net/'
 description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards
  a good balance between speed and ease of use. Integer, floating point and complex numbers are supported,
  as well as a subset of trigonometric and statistics functions."""
 
-toolchain = {'name': 'foss', 'version': '2025a'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 
 source_urls = ['https://sourceforge.net/projects/arma/files']
 sources = [SOURCELOWER_TAR_XZ]
-checksums = ['d18ccdb78a5da88f18fc529d8a8d40fad455842be6b01c59796f47a6f5bc7fe5']
+checksums = ['f520a0d50bbafccd7b9e793321cd7ffed374695c2e38bbdfd428841745e04c37']
 
 builddependencies = [
-    ('CMake', '3.31.3'),
+    ('CMake', '4.0.3'),
 ]
 dependencies = [
     ('HDF5', '1.14.6'),

Diff against Armadillo-14.0.3-foss-2024a.eb

easybuild/easyconfigs/a/Armadillo/Armadillo-14.0.3-foss-2024a.eb

diff --git a/easybuild/easyconfigs/a/Armadillo/Armadillo-14.0.3-foss-2024a.eb b/easybuild/easyconfigs/a/Armadillo/Armadillo-15.0.1-foss-2025b.eb
index 6a81dd466a..7b93cd9b7c 100644
--- a/easybuild/easyconfigs/a/Armadillo/Armadillo-14.0.3-foss-2024a.eb
+++ b/easybuild/easyconfigs/a/Armadillo/Armadillo-15.0.1-foss-2025b.eb
@@ -1,24 +1,24 @@
 easyblock = 'CMakeMake'
 
 name = 'Armadillo'
-version = '14.0.3'
+version = '15.0.1'
 
 homepage = 'https://arma.sourceforge.net/'
 description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards
  a good balance between speed and ease of use. Integer, floating point and complex numbers are supported,
  as well as a subset of trigonometric and statistics functions."""
 
-toolchain = {'name': 'foss', 'version': '2024a'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 
 source_urls = ['https://sourceforge.net/projects/arma/files']
 sources = [SOURCELOWER_TAR_XZ]
-checksums = ['ebd6215eeb01ee412fed078c8a9f7f87d4e1f6187ebcdc1bc09f46095a4f4003']
+checksums = ['f520a0d50bbafccd7b9e793321cd7ffed374695c2e38bbdfd428841745e04c37']
 
 builddependencies = [
-    ('CMake', '3.29.3'),
+    ('CMake', '4.0.3'),
 ]
 dependencies = [
-    ('HDF5', '1.14.5'),
+    ('HDF5', '1.14.6'),
     ('arpack-ng', '3.9.1'),
 ]

Diff against Armadillo-12.8.0-foss-2023b.eb

easybuild/easyconfigs/a/Armadillo/Armadillo-12.8.0-foss-2023b.eb

diff --git a/easybuild/easyconfigs/a/Armadillo/Armadillo-12.8.0-foss-2023b.eb b/easybuild/easyconfigs/a/Armadillo/Armadillo-15.0.1-foss-2025b.eb
index 2ca0b7de51..7b93cd9b7c 100644
--- a/easybuild/easyconfigs/a/Armadillo/Armadillo-12.8.0-foss-2023b.eb
+++ b/easybuild/easyconfigs/a/Armadillo/Armadillo-15.0.1-foss-2025b.eb
@@ -1,25 +1,32 @@
+easyblock = 'CMakeMake'
+
 name = 'Armadillo'
-version = '12.8.0'
+version = '15.0.1'
 
 homepage = 'https://arma.sourceforge.net/'
 description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards
  a good balance between speed and ease of use. Integer, floating point and complex numbers are supported,
  as well as a subset of trigonometric and statistics functions."""
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 
 source_urls = ['https://sourceforge.net/projects/arma/files']
 sources = [SOURCELOWER_TAR_XZ]
-checksums = ['a89bb6fece5ce9fdd1d01a4bc145cf7cc0b939c5777cca46de69c2f5e3412cf0']
+checksums = ['f520a0d50bbafccd7b9e793321cd7ffed374695c2e38bbdfd428841745e04c37']
 
 builddependencies = [
-    ('CMake', '3.27.6'),
+    ('CMake', '4.0.3'),
 ]
 dependencies = [
-    ('Boost', '1.83.0'),
-    ('HDF5', '1.14.3'),
-    ('arpack-ng', '3.9.0'),
+    ('HDF5', '1.14.6'),
+    ('arpack-ng', '3.9.1'),
 ]
 
+configopts = '-DBLAS_LIBRARY:PATH="$LIBBLAS" -DLAPACK_LIBRARY:PATH="$LIBLAPACK"'
+
+sanity_check_paths = {
+    'files': ['include/armadillo', f'lib/libarmadillo.{SHLIB_EXT}'],
+    'dirs': ['include/armadillo_bits'],
+}
 
 moduleclass = 'numlib'

Updated software `GDAL-3.11.3-foss-2025b.eb`

Diff against GDAL-3.11.1-foss-2025a.eb

easybuild/easyconfigs/g/GDAL/GDAL-3.11.1-foss-2025a.eb

diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-3.11.1-foss-2025a.eb b/easybuild/easyconfigs/g/GDAL/GDAL-3.11.3-foss-2025b.eb
index 576d49e7b2..a05e5bd5d4 100644
--- a/easybuild/easyconfigs/g/GDAL/GDAL-3.11.1-foss-2025a.eb
+++ b/easybuild/easyconfigs/g/GDAL/GDAL-3.11.3-foss-2025b.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'GDAL'
-version = '3.11.1'
+version = '3.11.3'
 
 homepage = 'https://www.gdal.org'
 description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style
@@ -9,44 +9,44 @@ description = """GDAL is a translator library for raster geospatial data formats
  to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for
  data translation and processing."""
 
-toolchain = {'name': 'foss', 'version': '2025a'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://download.osgeo.org/%(namelower)s/%(version)s/']
 sources = [SOURCELOWER_TAR_XZ]
 patches = ['%(name)s-3.6.2_fix-python-CC-CXX.patch']
 checksums = [
-    {'gdal-3.11.1.tar.xz': '21341b39a960295bd3194bcc5f119f773229b4701cd752499fbd850f3cc160fd'},
+    {'gdal-3.11.3.tar.xz': 'ba0807729fa681eed55bb6d5588bb9e4bde2b691c46e8d6d375ff5eaf789b16a'},
     {'GDAL-3.6.2_fix-python-CC-CXX.patch': '859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63'},
 ]
 
 builddependencies = [
-    ('CMake', '3.31.3'),
-    ('pkgconf', '2.3.0'),
+    ('CMake', '4.0.3'),
+    ('pkgconf', '2.4.3'),
     ('Bison', '3.8.2'),
 ]
 dependencies = [
-    ('Python', '3.13.1'),
-    ('SciPy-bundle', '2025.06'),
+    ('Python', '3.13.5'),
+    ('SciPy-bundle', '2025.07'),
     ('netCDF', '4.9.3'),
-    ('expat', '2.6.4'),
+    ('expat', '2.7.1'),
     ('GEOS', '3.13.1'),
-    ('SQLite', '3.47.2'),
-    ('libarchive', '3.7.7'),
-    ('libxml2', '2.13.4'),
-    ('libpng', '1.6.48'),
-    ('libjpeg-turbo', '3.1.0'),
+    ('SQLite', '3.50.1'),
+    ('libarchive', '3.8.1'),
+    ('libxml2', '2.14.3'),
+    ('libpng', '1.6.50'),
+    ('libjpeg-turbo', '3.1.1'),
     ('LibTIFF', '4.7.0'),
     ('zlib', '1.3.1'),
-    ('cURL', '8.11.1'),
+    ('cURL', '8.14.1'),
     ('PCRE', '8.45'),
     ('PROJ', '9.6.2'),
     ('libgeotiff', '1.7.4'),
     ('HDF5', '1.14.6'),
     ('HDF', '4.3.1'),
-    ('Armadillo', '14.6.0'),
+    ('Armadillo', '15.0.1'),
     ('CFITSIO', '4.6.2'),
-    ('zstd', '1.5.6'),
+    ('zstd', '1.5.7'),
     ('giflib', '5.2.2'),
     ('json-c', '0.18'),
     ('Xerces-C++', '3.3.0'),

Diff against GDAL-3.10.0-foss-2024a.eb

easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb

diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb b/easybuild/easyconfigs/g/GDAL/GDAL-3.11.3-foss-2025b.eb
index 131e1fcc81..a05e5bd5d4 100644
--- a/easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb
+++ b/easybuild/easyconfigs/g/GDAL/GDAL-3.11.3-foss-2025b.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'GDAL'
-version = '3.10.0'
+version = '3.11.3'
 
 homepage = 'https://www.gdal.org'
 description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style
@@ -9,54 +9,54 @@ description = """GDAL is a translator library for raster geospatial data formats
  to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for
  data translation and processing."""
 
-toolchain = {'name': 'foss', 'version': '2024a'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://download.osgeo.org/%(namelower)s/%(version)s/']
 sources = [SOURCELOWER_TAR_XZ]
 patches = ['%(name)s-3.6.2_fix-python-CC-CXX.patch']
 checksums = [
-    {'gdal-3.10.0.tar.xz': 'af821a3bcf68cf085724c21c9b53605fd451d83af3c8854d8bf194638eb734a8'},
+    {'gdal-3.11.3.tar.xz': 'ba0807729fa681eed55bb6d5588bb9e4bde2b691c46e8d6d375ff5eaf789b16a'},
     {'GDAL-3.6.2_fix-python-CC-CXX.patch': '859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63'},
 ]
 
 builddependencies = [
-    ('CMake', '3.29.3'),
-    ('pkgconf', '2.2.0'),
+    ('CMake', '4.0.3'),
+    ('pkgconf', '2.4.3'),
     ('Bison', '3.8.2'),
 ]
 dependencies = [
-    ('Python', '3.12.3'),
-    ('netCDF', '4.9.2'),
-    ('expat', '2.6.2'),
-    ('GEOS', '3.12.2'),
-    ('SQLite', '3.45.3'),
-    ('libarchive', '3.7.4'),
-    ('libxml2', '2.12.7'),
-    ('libpng', '1.6.43'),
-    ('libjpeg-turbo', '3.0.1'),
-    ('LibTIFF', '4.6.0'),
+    ('Python', '3.13.5'),
+    ('SciPy-bundle', '2025.07'),
+    ('netCDF', '4.9.3'),
+    ('expat', '2.7.1'),
+    ('GEOS', '3.13.1'),
+    ('SQLite', '3.50.1'),
+    ('libarchive', '3.8.1'),
+    ('libxml2', '2.14.3'),
+    ('libpng', '1.6.50'),
+    ('libjpeg-turbo', '3.1.1'),
+    ('LibTIFF', '4.7.0'),
     ('zlib', '1.3.1'),
-    ('cURL', '8.7.1'),
+    ('cURL', '8.14.1'),
     ('PCRE', '8.45'),
-    ('PROJ', '9.4.1'),
-    ('libgeotiff', '1.7.3'),
-    ('SciPy-bundle', '2024.05'),
-    ('HDF5', '1.14.5'),
-    ('HDF', '4.3.0'),
-    ('Armadillo', '14.0.3'),
-    ('CFITSIO', '4.4.1'),
-    ('zstd', '1.5.6'),
-    ('giflib', '5.2.1'),
-    ('json-c', '0.17'),
-    ('Xerces-C++', '3.2.5'),
-    ('PCRE2', '10.43'),
-    ('OpenEXR', '3.2.4'),
+    ('PROJ', '9.6.2'),
+    ('libgeotiff', '1.7.4'),
+    ('HDF5', '1.14.6'),
+    ('HDF', '4.3.1'),
+    ('Armadillo', '15.0.1'),
+    ('CFITSIO', '4.6.2'),
+    ('zstd', '1.5.7'),
+    ('giflib', '5.2.2'),
+    ('json-c', '0.18'),
+    ('Xerces-C++', '3.3.0'),
+    ('PCRE2', '10.45'),
+    ('OpenEXR', '3.3.4'),
     ('Brunsli', '0.1'),
     ('Qhull', '2020.2'),
     ('LERC', '4.0.0'),
-    ('OpenJPEG', '2.5.2'),
-    ('SWIG', '4.2.1'),
+    ('OpenJPEG', '2.5.3'),
+    ('SWIG', '4.3.1'),
 ]
 
 # iterative build for both static and shared libraries
@@ -70,7 +70,7 @@ configopts = [
 
 
 sanity_check_paths = {
-    'files': ['lib/libgdal.a', 'lib/libgdal.%s' % SHLIB_EXT],
+    'files': ['lib/libgdal.a', f'lib/libgdal.{SHLIB_EXT}'],
     'dirs': ['bin', 'include', 'lib/python%(pyshortver)s/site-packages'],
 }

Diff against GDAL-3.9.0-foss-2023b.eb

easybuild/easyconfigs/g/GDAL/GDAL-3.9.0-foss-2023b.eb

diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-3.9.0-foss-2023b.eb b/easybuild/easyconfigs/g/GDAL/GDAL-3.11.3-foss-2025b.eb
index 98d2c33629..a05e5bd5d4 100644
--- a/easybuild/easyconfigs/g/GDAL/GDAL-3.9.0-foss-2023b.eb
+++ b/easybuild/easyconfigs/g/GDAL/GDAL-3.11.3-foss-2025b.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'GDAL'
-version = '3.9.0'
+version = '3.11.3'
 
 homepage = 'https://www.gdal.org'
 description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style
@@ -9,54 +9,54 @@ description = """GDAL is a translator library for raster geospatial data formats
  to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for
  data translation and processing."""
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://download.osgeo.org/%(namelower)s/%(version)s/']
 sources = [SOURCELOWER_TAR_XZ]
 patches = ['%(name)s-3.6.2_fix-python-CC-CXX.patch']
 checksums = [
-    {'gdal-3.9.0.tar.xz': '577f80e9d14ff7c90b6bfbc34201652b4546700c01543efb4f4c3050e0b3fda2'},
+    {'gdal-3.11.3.tar.xz': 'ba0807729fa681eed55bb6d5588bb9e4bde2b691c46e8d6d375ff5eaf789b16a'},
     {'GDAL-3.6.2_fix-python-CC-CXX.patch': '859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63'},
 ]
 
 builddependencies = [
-    ('CMake', '3.27.6'),
-    ('pkgconf', '2.0.3'),
+    ('CMake', '4.0.3'),
+    ('pkgconf', '2.4.3'),
     ('Bison', '3.8.2'),
 ]
 dependencies = [
-    ('Python', '3.11.5'),
-    ('netCDF', '4.9.2'),
-    ('expat', '2.5.0'),
-    ('GEOS', '3.12.1'),
-    ('SQLite', '3.43.1'),
-    ('libarchive', '3.7.2'),
-    ('libxml2', '2.11.5'),
-    ('libpng', '1.6.40'),
-    ('libjpeg-turbo', '3.0.1'),
-    ('LibTIFF', '4.6.0'),
-    ('zlib', '1.2.13'),
-    ('cURL', '8.3.0'),
+    ('Python', '3.13.5'),
+    ('SciPy-bundle', '2025.07'),
+    ('netCDF', '4.9.3'),
+    ('expat', '2.7.1'),
+    ('GEOS', '3.13.1'),
+    ('SQLite', '3.50.1'),
+    ('libarchive', '3.8.1'),
+    ('libxml2', '2.14.3'),
+    ('libpng', '1.6.50'),
+    ('libjpeg-turbo', '3.1.1'),
+    ('LibTIFF', '4.7.0'),
+    ('zlib', '1.3.1'),
+    ('cURL', '8.14.1'),
     ('PCRE', '8.45'),
-    ('PROJ', '9.3.1'),
-    ('libgeotiff', '1.7.3'),
-    ('SciPy-bundle', '2023.11'),
-    ('HDF5', '1.14.3'),
-    ('HDF', '4.2.16-2'),
-    ('Armadillo', '12.8.0'),
-    ('CFITSIO', '4.3.1'),
-    ('zstd', '1.5.5'),
-    ('giflib', '5.2.1'),
-    ('json-c', '0.17'),
-    ('Xerces-C++', '3.2.5'),
-    ('PCRE2', '10.42'),
-    ('OpenEXR', '3.2.0'),
+    ('PROJ', '9.6.2'),
+    ('libgeotiff', '1.7.4'),
+    ('HDF5', '1.14.6'),
+    ('HDF', '4.3.1'),
+    ('Armadillo', '15.0.1'),
+    ('CFITSIO', '4.6.2'),
+    ('zstd', '1.5.7'),
+    ('giflib', '5.2.2'),
+    ('json-c', '0.18'),
+    ('Xerces-C++', '3.3.0'),
+    ('PCRE2', '10.45'),
+    ('OpenEXR', '3.3.4'),
     ('Brunsli', '0.1'),
     ('Qhull', '2020.2'),
     ('LERC', '4.0.0'),
-    ('OpenJPEG', '2.5.0'),
-    ('SWIG', '4.1.1'),
+    ('OpenJPEG', '2.5.3'),
+    ('SWIG', '4.3.1'),
 ]
 
 # iterative build for both static and shared libraries
@@ -70,7 +70,7 @@ configopts = [
 
 
 sanity_check_paths = {
-    'files': ['lib/libgdal.a', 'lib/libgdal.%s' % SHLIB_EXT],
+    'files': ['lib/libgdal.a', f'lib/libgdal.{SHLIB_EXT}'],
     'dirs': ['bin', 'include', 'lib/python%(pyshortver)s/site-packages'],
 }

Updated software `netCDF-4.9.3-gompi-2025b.eb`

Diff against netCDF-4.9.3-iimpi-2025b.eb

easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-iimpi-2025b.eb

diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-iimpi-2025b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025b.eb
index af6a3238e7..e05e8d8d7a 100644
--- a/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-iimpi-2025b.eb
+++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025b.eb
@@ -6,7 +6,7 @@ description = """NetCDF (network Common Data Form) is a set of software librarie
  and machine-independent data formats that support the creation, access, and sharing of array-oriented
  scientific data."""
 
-toolchain = {'name': 'iimpi', 'version': '2025b'}
+toolchain = {'name': 'gompi', 'version': '2025b'}
 toolchainopts = {'pic': True, 'usempi': True}
 
 source_urls = ['https://github.com/Unidata/%(namelower)s-c/archive/']

Diff against netCDF-4.9.3-iimpi-2025a.eb

easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-iimpi-2025a.eb

diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-iimpi-2025a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025b.eb
index 5b40bd2a0e..e05e8d8d7a 100644
--- a/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-iimpi-2025a.eb
+++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025b.eb
@@ -6,7 +6,7 @@ description = """NetCDF (network Common Data Form) is a set of software librarie
  and machine-independent data formats that support the creation, access, and sharing of array-oriented
  scientific data."""
 
-toolchain = {'name': 'iimpi', 'version': '2025a'}
+toolchain = {'name': 'gompi', 'version': '2025b'}
 toolchainopts = {'pic': True, 'usempi': True}
 
 source_urls = ['https://github.com/Unidata/%(namelower)s-c/archive/']
@@ -18,16 +18,16 @@ checksums = [
 ]
 
 builddependencies = [
-    ('Autotools', '20240712'),
-    ('CMake', '3.31.3'),
+    ('Autotools', '20250527'),
+    ('CMake', '4.0.3'),
     ('Doxygen', '1.14.0'),
 ]
 dependencies = [
     ('HDF5', '1.14.6'),
-    ('cURL', '8.11.1'),
+    ('cURL', '8.14.1'),
     ('Szip', '2.1.1'),
     ('bzip2', '1.0.8'),
-    ('libxml2', '2.13.4'),
+    ('libxml2', '2.14.3'),
 ]
 
 # disable Szip, zlib parallel I/O tests, since these can hang on some systems, e.g. generoso

Diff against netCDF-4.9.3-gompi-2025a.eb

easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025a.eb

diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025b.eb
index d2921b3d4a..e05e8d8d7a 100644
--- a/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025a.eb
+++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.9.3-gompi-2025b.eb
@@ -6,7 +6,7 @@ description = """NetCDF (network Common Data Form) is a set of software librarie
  and machine-independent data formats that support the creation, access, and sharing of array-oriented
  scientific data."""
 
-toolchain = {'name': 'gompi', 'version': '2025a'}
+toolchain = {'name': 'gompi', 'version': '2025b'}
 toolchainopts = {'pic': True, 'usempi': True}
 
 source_urls = ['https://github.com/Unidata/%(namelower)s-c/archive/']
@@ -18,16 +18,16 @@ checksums = [
 ]
 
 builddependencies = [
-    ('Autotools', '20240712'),
-    ('CMake', '3.31.3'),
+    ('Autotools', '20250527'),
+    ('CMake', '4.0.3'),
     ('Doxygen', '1.14.0'),
 ]
 dependencies = [
     ('HDF5', '1.14.6'),
-    ('cURL', '8.11.1'),
+    ('cURL', '8.14.1'),
     ('Szip', '2.1.1'),
     ('bzip2', '1.0.8'),
-    ('libxml2', '2.13.4'),
+    ('libxml2', '2.14.3'),
 ]
 
 # disable Szip, zlib parallel I/O tests, since these can hang on some systems, e.g. generoso

Updated software `Xerces-C++-3.3.0-GCCcore-14.3.0.eb`

Diff against Xerces-C++-3.3.0-GCCcore-14.2.0.eb

easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.2.0.eb

diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.2.0.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.3.0.eb
index 47c4961c1b..832cf46be9 100644
--- a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.2.0.eb
+++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.3.0.eb
@@ -11,7 +11,7 @@ read and write XML data. A shared library is provided for parsing, generating,
 manipulating, and validating XML documents using the DOM, SAX, and SAX2
 APIs."""
 
-toolchain = {'name': 'GCCcore', 'version': '14.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '14.3.0'}
 
 source_urls = ['https://archive.apache.org/dist/xerces/c/%(version_major)s/sources/']
 sources = ['xerces-c-%(version)s.tar.gz']
@@ -23,14 +23,14 @@ checksums = [
 ]
 
 builddependencies = [
-    ('pkgconf', '2.3.0'),
-    ('binutils', '2.42'),
-    ('CMake', '3.31.3'),
-    ('ICU', '76.1'),
+    ('pkgconf', '2.4.3'),
+    ('binutils', '2.44'),
+    ('CMake', '4.0.3'),
+    ('ICU', '77.1'),
 ]
 
 dependencies = [
-    ('cURL', '8.11.1'),
+    ('cURL', '8.14.1'),
 ]
 
 runtest = 'test'

Diff against Xerces-C++-3.2.5-GCCcore-13.3.0.eb

easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.2.5-GCCcore-13.3.0.eb

diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.2.5-GCCcore-13.3.0.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.3.0.eb
index d87a3e86d0..832cf46be9 100644
--- a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.2.5-GCCcore-13.3.0.eb
+++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.3.0.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'Xerces-C++'
-version = '3.2.5'
+version = '3.3.0'
 
 homepage = 'https://xerces.apache.org/xerces-c/'
 
@@ -11,36 +11,37 @@ read and write XML data. A shared library is provided for parsing, generating,
 manipulating, and validating XML documents using the DOM, SAX, and SAX2
 APIs."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '14.3.0'}
 
 source_urls = ['https://archive.apache.org/dist/xerces/c/%(version_major)s/sources/']
 sources = ['xerces-c-%(version)s.tar.gz']
-patches = ['Xerces-C++-3.2.5_Change-CXX-standard-to-17.patch']
+patches = ['%(name)s-3.2.5_Change-CXX-standard-to-17.patch']
 checksums = [
-    # xerces-c-3.2.5.tar.gz
-    '545cfcce6c4e755207bd1f27e319241e50e37c0c27250f11cda116018f1ef0f5',
-    # Xerces-C++-3.2.5_Change-CXX-standard-to-17.patch
-    'be97c578849f66032beb9d5bd8e3baa2fc25f5a31e5721b728fc6ea6205457d9',
+    {'xerces-c-3.3.0.tar.gz': '9555f1d06f82987fbb4658862705515740414fd34b4db6ad2ed76a2dc08d3bde'},
+    {'Xerces-C++-3.2.5_Change-CXX-standard-to-17.patch':
+     'be97c578849f66032beb9d5bd8e3baa2fc25f5a31e5721b728fc6ea6205457d9'},
 ]
 
 builddependencies = [
-    ('pkgconf', '2.2.0'),
-    ('binutils', '2.42'),
-    ('CMake', '3.29.3'),
-    ('ICU', '75.1'),
+    ('pkgconf', '2.4.3'),
+    ('binutils', '2.44'),
+    ('CMake', '4.0.3'),
+    ('ICU', '77.1'),
 ]
 
 dependencies = [
-    ('cURL', '8.7.1'),
+    ('cURL', '8.14.1'),
 ]
 
 runtest = 'test'
 
 sanity_check_paths = {
-    'files': ['bin/XInclude',
-              'include/xercesc/xinclude/XIncludeUtils.hpp',
-              'lib/libxerces-c-3.2.%s' % SHLIB_EXT],
-    'dirs': ['bin', 'include', 'lib']
+    "files": [
+        "bin/XInclude",
+        "include/xercesc/xinclude/XIncludeUtils.hpp",
+        f"lib/libxerces-c-%(version_major_minor)s.{SHLIB_EXT}",
+    ],
+    "dirs": ["bin", "include", "lib"],
 }
 
 moduleclass = 'lib'

Diff against Xerces-C++-3.2.5-GCCcore-13.2.0.eb

easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.2.5-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.2.5-GCCcore-13.2.0.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.3.0.eb
index bd3ec06470..832cf46be9 100644
--- a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.2.5-GCCcore-13.2.0.eb
+++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.3.0-GCCcore-14.3.0.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'Xerces-C++'
-version = '3.2.5'
+version = '3.3.0'
 
 homepage = 'https://xerces.apache.org/xerces-c/'
 
@@ -11,29 +11,37 @@ read and write XML data. A shared library is provided for parsing, generating,
 manipulating, and validating XML documents using the DOM, SAX, and SAX2
 APIs."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '14.3.0'}
 
 source_urls = ['https://archive.apache.org/dist/xerces/c/%(version_major)s/sources/']
 sources = ['xerces-c-%(version)s.tar.gz']
-checksums = ['545cfcce6c4e755207bd1f27e319241e50e37c0c27250f11cda116018f1ef0f5']
+patches = ['%(name)s-3.2.5_Change-CXX-standard-to-17.patch']
+checksums = [
+    {'xerces-c-3.3.0.tar.gz': '9555f1d06f82987fbb4658862705515740414fd34b4db6ad2ed76a2dc08d3bde'},
+    {'Xerces-C++-3.2.5_Change-CXX-standard-to-17.patch':
+     'be97c578849f66032beb9d5bd8e3baa2fc25f5a31e5721b728fc6ea6205457d9'},
+]
 
 builddependencies = [
-    ('pkgconf', '2.0.3'),
-    ('binutils', '2.40'),
-    ('CMake', '3.27.6'),
+    ('pkgconf', '2.4.3'),
+    ('binutils', '2.44'),
+    ('CMake', '4.0.3'),
+    ('ICU', '77.1'),
 ]
 
 dependencies = [
-    ('cURL', '8.3.0'),
+    ('cURL', '8.14.1'),
 ]
 
 runtest = 'test'
 
 sanity_check_paths = {
-    'files': ['bin/XInclude',
-              'include/xercesc/xinclude/XIncludeUtils.hpp',
-              'lib/libxerces-c-3.2.%s' % SHLIB_EXT],
-    'dirs': ['bin', 'include', 'lib']
+    "files": [
+        "bin/XInclude",
+        "include/xercesc/xinclude/XIncludeUtils.hpp",
+        f"lib/libxerces-c-%(version_major_minor)s.{SHLIB_EXT}",
+    ],
+    "dirs": ["bin", "include", "lib"],
 }
 
 moduleclass = 'lib'

Co-authored-by: Jan André Reuter <[email protected]>

pavelToman · 2025-09-02T12:06:26Z

Test report by @pavelToman
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
node4016.donphan.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 570.133.20, Python 3.9.18
See https://gist.github.com/pavelToman/d8cc3d05bce8ddc3561f8a8461e36733 for a full test report.

…asyconfigs into 20250901152504_new_pr_osmium-tool1180

boegel · 2025-09-03T12:20:04Z

@boegelbot please test @ jsc-zen3
CORE_CNT=16

boegelbot · 2025-09-03T12:20:09Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23768 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23768 --ntasks="16" ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7836

Test results coming soon (I hope)...

Details

- notification for comment with ID 3249015899 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-09-03T13:36:29Z

Test report by @boegelbot
SUCCESS
Build succeeded for 8 out of 8 (7 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/8d79b559de966914a0569bef17475519 for a full test report.

boegel · 2025-09-03T14:03:36Z

Test report by @boegel
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
node3512.doduo.os - Linux RHEL 9.4, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.9.18
See https://gist.github.com/boegel/d541f34d153c205918a8cf09742c19f4 for a full test report.

boegel

lgtm

boegel · 2025-09-03T14:21:01Z

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node3512.doduo.os - Linux RHEL 9.4, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.9.18
See https://gist.github.com/boegel/378f10387605fb4719ed5e89adf7f540 for a full test report.

boegel · 2025-09-03T14:27:32Z

@boegelbot please test @ jsc-zen3
EB_ARGS="protozero-1.8.1-GCCcore-14.3.0.eb libosmium-2.22.0-foss-2025b.eb osmium-tool-1.18.0-foss-2025b.eb"

boegelbot · 2025-09-03T14:30:20Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23768 EB_ARGS="protozero-1.8.1-GCCcore-14.3.0.eb libosmium-2.22.0-foss-2025b.eb osmium-tool-1.18.0-foss-2025b.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23768 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7845

Test results coming soon (I hope)...

Details

- notification for comment with ID 3249499027 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-09-03T14:38:08Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/454c85718cb0e4a8040c8020251a156b for a full test report.

boegel · 2025-09-03T14:39:01Z

Going in, thanks @pavelToman!

adding easyconfigs: osmium-tool-1.18.0-foss-2025b.eb, libosmium-2.22.…

26122c1

…0-foss-2025b.eb, GDAL-3.11.3-foss-2025b.eb, Armadillo-15.0.1-foss-2025b.eb, Xerces-C++-3.3.0-GCCcore-14.3.0.eb, netCDF-4.9.3-gompi-2025b.eb, protozero-1.8.1-foss-2025b.eb

pavelToman added new update labels Sep 1, 2025

pavelToman mentioned this pull request Sep 1, 2025

osmium vscentrum/vsc-software-stack#593

Closed

update protozero modextrapaths

9d64af5

Thyre added the 2025b issues & PRs related to 2025b common toolchains label Sep 1, 2025

Thyre reviewed Sep 1, 2025

View reviewed changes

Comment thread easybuild/easyconfigs/p/protozero/protozero-1.8.1-foss-2025b.eb Outdated

Update easybuild/easyconfigs/p/protozero/protozero-1.8.1-foss-2025b.eb

5864059

Co-authored-by: Jan André Reuter <[email protected]>

boegel changed the title ~~{data,tools}[foss/2025b] osmium-tool v1.18.0, libosmium v2.22.0, GDAL v3.11.3, ...~~ {data,tools}[foss/2025b] osmium-tool v1.18.0, libosmium v2.22.0, GDAL v3.11.3, Armadillo v15.0.1, netCDF v4.9.3, protozero v1.8.1, Xerces-C++ v3.3.0 Sep 3, 2025

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

7eab3be

…asyconfigs into 20250901152504_new_pr_osmium-tool1180

boegel added this to the next release (5.1.2) milestone Sep 3, 2025

stick to GCCcore toolchain for protozero

65b507f

boegel approved these changes Sep 3, 2025

View reviewed changes

boegel merged commit 53f334d into easybuilders:develop Sep 3, 2025
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Updated software Armadillo-15.0.1-foss-2025b.eb

Updated software GDAL-3.11.3-foss-2025b.eb

Updated software netCDF-4.9.3-gompi-2025b.eb

Updated software Xerces-C++-3.3.0-GCCcore-14.3.0.eb

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pavelToman commented Sep 1, 2025 •

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Updated software `Armadillo-15.0.1-foss-2025b.eb`

Updated software `GDAL-3.11.3-foss-2025b.eb`

Updated software `netCDF-4.9.3-gompi-2025b.eb`

Updated software `Xerces-C++-3.3.0-GCCcore-14.3.0.eb`