Repositories list

• jazzPanda_workflowr

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• jazzPanda_paper

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 17, 2026Feb 17, 2026

• single_cell_workshop

  Public
  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 15, 2026Jan 15, 2026

• jazzPanda

  Public
  A hybrid approach to find spatially relevant marker genes in image based spatial transcriptomics data

  rcorrelationmarker-genes+ 2

  rcorrelationmarker-geneslinear-modelsspatial-transcriptomics

  R

  •

  GNU General Public License v3.0

  •11 fork•44 stars•00 issues•00 pull requests•Updated Nov 19, 2025Nov 19, 2025

• SuperCellCyto

  Public
  SuperCell for Cytometry data

  bioinformaticsrcomputational-biology+ 1

  bioinformaticsrcomputational-biologycytometry

  R

  •

  GNU General Public License v3.0

  •11 fork•1313 stars•00 issues•00 pull requests•Updated Oct 14, 2025Oct 14, 2025

• phipson-lab-website

  Public
  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 18, 2025Aug 18, 2025

• NextClone

  Public
  Nextflow pipeline for extracting and counting clonal barcodes

  nextflowscrnaseqclonal-evolution+ 1

  nextflowscrnaseqclonal-evolutionnextflow-pipeline

  Python

  •

  MIT License

  •55 forks•55 stars•00 issues•11 pull request•Updated Jun 18, 2025Jun 18, 2025

• cellXY

  Public
  R package to predict sex of single cells and identify Male/Female doublets using machine learning approaches

  machine-learningrsingle-cell-rna-seq

  machine-learningrsingle-cell-rna-seq

  R

  •

  GNU General Public License v3.0

  •77 forks•88 stars•55 issues•11 pull request•Updated Nov 11, 2024Nov 11, 2024

• jazzPanda_vignette

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 10, 2024Sep 10, 2024

• NextClone-analysis

  Public
  Analysis for NextClone pipeline

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 14, 2024Jun 14, 2024

• spaceMarker

  Public
  rmarker-geneslinear-models+ 2

  rmarker-geneslinear-modelsspatial-transcriptomicsxenium

  R

  •

  GNU General Public License v3.0

  •00 forks•33 stars•00 issues•00 pull requests•Updated May 30, 2024May 30, 2024

• SuperCellCyto-analysis

  Public
  Code to reproduce analysis done for SuperCellCyto paper

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 31, 2024Jan 31, 2024

• CloneDetective

  Public
  R Package for interrogating clonal data

  r-packagescrnaseqngs-analysis+ 2

  r-packagescrnaseqngs-analysisclonal-evolutionclonal-analysis

  R

  •

  MIT License

  •22 forks•00 stars•22 issues•33 pull requests•Updated Nov 14, 2023Nov 14, 2023

• speckle

  Public
  R package for analysing single cell data

  rstatisticsscrna-seq+ 1

  rstatisticsscrna-seqproportions

  R

  •

  GNU General Public License v3.0

  •77 forks•6464 stars•66 issues•00 pull requests•Updated Dec 8, 2022Dec 8, 2022

• supercells_for_cytometry

  Public archive
  Supercells enhances analysis of cytometry data

  Python

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 7, 2022Oct 7, 2022

• speckle_old

  Public
  R package for analysing single cell data

  R

  •

  GNU General Public License v3.0

  •11 fork•66 stars•00 issues•00 pull requests•Updated Aug 25, 2022Aug 25, 2022

• propeller-paper-analysis

  Public
  The website hosts the analysis and evaluation of different statistical methods for determining differences in cell type proportions in single cell RNA-seq data…

  MIT License

  •22 forks•33 stars•00 issues•00 pull requests•Updated Aug 19, 2022Aug 19, 2022

• classify-sex-models

  Public
  Caret models for classifySex function in speckle package

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 10, 2022Aug 10, 2022