GitHub - ranlib/target: Analysis pipeline for whole genome sequencing data

Analysis pipeline for whole genome sequencing data

Name		Name	Last commit message	Last commit date
Latest commit History 651 Commits
centrifuge_database/index		centrifuge_database/index
configuration		configuration
contamination		contamination
data		data
docs		docs
intervals		intervals
references		references
scripts		scripts
snpEff_database		snpEff_database
snpEff_database_cdc		snpEff_database_cdc
snpEff_database_tbprofiler		snpEff_database_tbprofiler
tests		tests
tools		tools
wdldocs		wdldocs
.dockerignore		.dockerignore
.gitattributes		.gitattributes
.gitignore		.gitignore
Dockerfile		Dockerfile
Dockerfile.lineage		Dockerfile.lineage
LICENSE		LICENSE
README.md		README.md
environment.yml		environment.yml
make_bbduk_contamination.sh		make_bbduk_contamination.sh
make_clockwork_contamination.sh		make_clockwork_contamination.sh
make_clockwork_contamination_cdc_v2.sh		make_clockwork_contamination_cdc_v2.sh
make_fastq_screen_contamination.sh		make_fastq_screen_contamination.sh
miniwdl_production.cfg		miniwdl_production.cfg
varpipe4_v2.0.0.tar.gz		varpipe4_v2.0.0.tar.gz

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