Skip to content
Change the repository type filter

All

    Repositories list

    • sketchlib.rust

      Public
      Fast sequence distance estimates
      Rust
      Apache License 2.0
      628181Updated Apr 17, 2026Apr 17, 2026
    • BacPrune-Rust

      Public
      Rust
      GNU General Public License v3.0
      0100Updated Apr 14, 2026Apr 14, 2026
    • bacpop-website

      Public
      Code for group website
      HTML
      Apache License 2.0
      8100Updated Apr 13, 2026Apr 13, 2026
    • ggCaller

      Public
      Bifrost graph gene caller.
      C++
      MIT License
      69830Updated Apr 12, 2026Apr 12, 2026
    • sparrowhawk

      Public
      Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust 🦅
      Rust
      Apache License 2.0
      212100Updated Apr 9, 2026Apr 9, 2026
    • Web interface for the sparrowhawk genome assembler using WebAssembly and Rust 🦅
      Vue
      Apache License 2.0
      1180Updated Apr 9, 2026Apr 9, 2026
    • ska.rust

      Public
      Split k-mer analysis – version 2
      Rust
      Apache License 2.0
      9105140Updated Apr 9, 2026Apr 9, 2026
    • biomics_website

      Public
      Website for BIOMICS hackathon
      SCSS
      4001Updated Apr 9, 2026Apr 9, 2026
    • TOMBOMBADIL_jax

      Public
      JAX prototype of TOMBOMBADIL
      Python
      Apache License 2.0
      0000Updated Mar 24, 2026Mar 24, 2026
    • Stubentiger

      Public
      An R package for a negative frequency-dependent selection (NFDS) model to describe vaccine type replacement in Streptococcus pneumoniae populations
      C++
      Apache License 2.0
      1410Updated Mar 19, 2026Mar 19, 2026
    • Negative frequency-dependent selection (NFDS) model to describe vaccine type replacement in Streptococcus pneumoniae populations
      R
      Apache License 2.0
      0000Updated Mar 16, 2026Mar 16, 2026
    • A viewer of odin.js models from the biomodels database
      JavaScript
      MIT License
      1460Updated Mar 7, 2026Mar 7, 2026
    • Methods to determine sequence element (unitig) presence/absence
      C++
      Apache License 2.0
      324130Updated Mar 6, 2026Mar 6, 2026
    • PopPUNK

      Public
      PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
      Python
      Apache License 2.0
      21107350Updated Mar 2, 2026Mar 2, 2026
    • PopPIPE

      Public
      Population analysis PIPEline 🛠🧬
      Python
      Apache License 2.0
      72320Updated Mar 2, 2026Mar 2, 2026
    • Runs compression and indexing of fasta/gff files for jbrowse (in wasm)
      Rust
      0100Updated Mar 1, 2026Mar 1, 2026
    • Tree-free Omega Mapping By Observing Mutations of Bases and Amino acids Distributed Inside Loci
      Stan
      Apache License 2.0
      0500Updated Feb 24, 2026Feb 24, 2026
    • beebop

      Public
      Frontend code for beebop
      TypeScript
      Other
      0140Updated Feb 24, 2026Feb 24, 2026
    • Deploy scripts for beebop
      Python
      MIT License
      0000Updated Feb 10, 2026Feb 10, 2026
    • beebop_py

      Public
      Python API for beebop
      Python
      0003Updated Jan 20, 2026Jan 20, 2026
    • Pansim

      Public
      Pangenome simulator
      Rust
      MIT License
      0500Updated Oct 27, 2025Oct 27, 2025
    • An R package for translating SBML models into odin models.
      R
      Apache License 2.0
      0300Updated Jun 20, 2025Jun 20, 2025
    • Mutation simulation to test ska.rust sensitivity
      Rust
      Apache License 2.0
      0100Updated Jun 12, 2025Jun 12, 2025
    • Library of sketching functions used by PopPUNK
      C++
      Apache License 2.0
      831120Updated Mar 31, 2025Mar 31, 2025
    • mandrake

      Public
      Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
      Python
      Apache License 2.0
      23940Updated Mar 7, 2025Mar 7, 2025
    • A collection of models that can be implemented, simulated and fitted using odin, dust and mcstate.
      HTML
      Apache License 2.0
      0100Updated Feb 18, 2025Feb 18, 2025
    • trees_rs

      Public
      Tree inference in rust
      Rust
      GNU Affero General Public License v3.0
      1260Updated Jan 6, 2025Jan 6, 2025
    • Shell
      0000Updated Sep 5, 2024Sep 5, 2024
    • readfish

      Public
      Read Until scripts with graph alignment
      Python
      GNU General Public License v3.0
      35200Updated Aug 22, 2024Aug 22, 2024
    • DATACIN

      Public
      Draw A Tree And Colour it IN
      Rust
      1140Updated Aug 5, 2024Aug 5, 2024
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.